Erigeron canadensis (horseweed): 122604901
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Entry
122604901 CDS
T07610
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122604901
Enzymes [BR:
ecad01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122604901
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
VWC2L_C
Motif
Other DBs
NCBI-GeneID:
122604901
NCBI-ProteinID:
XP_043633697
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All DBs
Position
1:2217328..2220228
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AA seq
401 aa
AA seq
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MALPIFFLLVAFLAPISTLSSQTQDPNLVVEHVHRKLNESRRNMGFLSCGTGNPIDDCWR
CDKSWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDSKNDDPVNPKPGTLRYGVIQNEPL
WIIFAHDMTIKLKEELMMNSFKTIDGRGADVHIAGGPCITIQYVTNIIIHGINIHDCKQG
GNTDVRDSPDHYGYRTISDGDGISIFGGSHVWVDHCSLANCHDGLIDAIHGSTAITISNN
YMTHHDKVMLLGHSDTLTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEM
YAIGGSASPTINSQGNRFLAPNDHENKEVTKREEAGEDEWRSWNWRSEGDLMLNGAYFTP
SGQGASKSYARASSLSARPSSIVGSITANAGVLGCRRGSRC
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcattgccaatattttttctacttgttgcttttcttgctcctatatcaactctctct
tcacaaacacaagatcccaatcttgttgtagaacatgtccacaggaaattaaatgaatct
aggaggaacatgggatttttgtcatgcgggaccggaaatccgatcgatgattgttggaga
tgtgacaaaagttgggaaaagaatcgtcagcgattagcagattgcgcaatcgggtttggc
aaacacgcaattggtggacgcgatggtaaaatatacgtcgtgacagattccaaaaatgat
gaccccgttaatcctaagccaggaactttacgatatggtgtgatacaaaatgaaccacta
tggatcattttcgcacatgacatgaccattaaactaaaagaagaactaatgatgaactca
ttcaagactattgatggccgcggtgccgatgttcatatcgcgggtgggccatgtataaca
atccaatatgtcacaaatattataattcatggtataaatatacatgattgtaaacaagga
ggaaatactgatgttcgcgactcgcctgaccattacgggtataggacgatatcggatggc
gatgggatctcgatttttgggggaagtcatgtatgggttgaccattgttcgttggctaat
tgtcatgatgggctaattgatgcaatacatggttccacagccattactatatctaacaat
tatatgacacaccatgataaggttatgttgttgggacatagtgataccttgactcaagac
aagaatatgcaagtcacaattgcatttaatcattttggtgaaggccttgtacaaaggatg
ccaagatgtaggcatgggtatttccatgtggtgaacaatgactatactcattgggaaatg
tatgcaattggaggaagtgcatctccaaccatcaatagccaaggaaatagatttcttgct
ccaaatgatcatgaaaacaaagaagtgacaaaacgtgaggaggcaggggaggacgagtgg
aggagttggaattggcgttcggaaggagacctaatgttaaacggtgcatattttacacca
tcgggtcaaggggcatccaagagctatgcaagagcatcgagcctgagtgcaagaccatct
tcgattgtgggctcaatcacggctaatgcaggtgtgctcggatgcaggagaggttcacgg
tgctag
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