Erigeron canadensis (horseweed): 122605062
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Entry
122605062 CDS
T07610
Name
(RefSeq) mRNA-decapping enzyme-like protein
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122605062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122605062
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122605062
mRNA degradation factors
5'-3' decay
Decapping complex
122605062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
122605062
NCBI-ProteinID:
XP_043633874
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Position
1:complement(55905296..55913747)
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AA seq
364 aa
AA seq
DB search
MSQSGVGGGKLMPNLDENSTKILNLTVLQRMDPYIEQILITAAHVTFYEFNVELNQWSRK
DVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEFELQVPYLLYRNASQEVNGIW
FYNTRECEDVANLFTRILGAYSKVPPKQKVNKSEFEELEAVPTSAVIEGPLEPGLTTSRT
TDVPEDTSFVNFFSTAMNLGHNTSIPVTSMQPYHNSTTIPLSSRDAPSPVVNNPPLQIPS
SAPSMPPHDNVDPLNMSNHLTNLIKPLSFFTPASSSSTLMRQPSSSVPVPALQPPLNVQR
NVGIPLLQPFPPPTPPPSLTPASTSGPYYGPLSREKVREALVLLSQDNQFIDMFYQALLK
VHQS
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaagtggtgttgggggtggaaagttaatgccaaatctggatgaaaacagcaca
aagattctgaatctgacagttcttcaaagaatggatccttatattgaacagatcttgatc
actgctgctcatgttactttttatgaattcaatgttgaacttaatcaatggagtcgcaag
gacgttgaagggtctctctttgtcgtcaagaggaacactcagccaaggtttcaattcata
gtaatgaatcgtcgaaatacagaaaaccttgtggagaatctgcttggagattttgagttt
gaacttcaagttccatatcttttgtatcgaaatgcttctcaagaagtcaatggtatttgg
ttttacaatacgcgtgagtgtgaggatgttgcaaacctctttacaagaattcttggtgca
tattcaaaggttccccccaagcagaaagtgaacaaaagcgaatttgaggaacttgaagca
gtacctacttctgctgtaattgaaggaccattggagccagggttgactacctcacgcact
acagatgtacccgaggatacttcatttgtaaacttctttagtactgctatgaatttggga
cataacacctcgattcctgttacttccatgcaaccctatcataattcaacaacaattcca
ttatcttcccgagatgcaccttctcctgtggtgaataatccaccattacagatcccctca
tctgccccatcaatgccaccccatgacaatgttgatccgctcaacatgagcaatcatttg
accaatcttatcaagcctctttctttctttacacccgcctcttcttcttctacattaatg
agacagccttcttcatctgtgccagttcccgctcttcagccaccactaaatgtacaaaga
aatgttggtattcccttgcttcaaccttttccaccacccactccgccaccatctctcacc
cctgcttccacttctggtccatattacggaccattgagcagagaaaaagttcgagaggcg
cttgtactgctttcacaggataaccaattcatcgacatgttctaccaagccttactgaaa
gtgcatcaatcataa
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