Erigeron canadensis (horseweed): 122605172
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Entry
122605172 CDS
T07610
Name
(RefSeq) RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
KO
K03093
RNA polymerase sigma-I factor
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122605172
Transcription machinery [BR:
ecad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
122605172
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
GerE
HTH_11
Sigma70_r4_2
Complex1_49kDa
Motif
Other DBs
NCBI-GeneID:
122605172
NCBI-ProteinID:
XP_043634001
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All DBs
Position
6:44191503..44195309
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AA seq
520 aa
AA seq
DB search
MGVVTVSSSAARTSFGLSSRFSAHLLPTTKRTPILAFKTDKTNNTTTLVSSKESANLSSV
DTTPKENPKRSLRRKKPFERVQALSTAEAPSCSLDLDYNEAAAVLNRLYKLSPTTTESDT
EDSDNTPVKMVPRGRRTKTSKKPEIRKVVDVVRGQHKKVHRLTLENRIHLKNNKDVAVVT
STRLRKHAKVNEDENINKLVKDHSPSTDLGSLDWKKMKIPPVLPSSEHTRLFKLLQTMKV
ILAVKEDLQNVLEREPTDGELAEATNMNVSQLRKQLGVGQAARNKLIKHNLRLVLFVMNK
YFQEFANGRNFQDFCQAGVKGLITAVDRFEPGRKLQLSTYALFWIRHAIIRSMTLSSFFK
VPFGLESVRIEIQKAKKKLWFDLMRPPSEEEIAKKAGISLERYREVKKASTPVLSLNRKN
PVTQEEFINTFADNDGGGDDERRQIALLRLALDDVLDSLKPKESVVIRQRYGLDGKGNRT
LGEIAGNLNISREMVRKHEVKALMKLKHPARVEYLRHYLL
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgggagttgtgactgtatctagctctgctgcaaggacttctttcggattaagttcaaga
ttttctgctcatcttcttccgacgactaagagaacaccaatactagcatttaaaacagat
aaaaccaacaacaccacaactttggtctcctcgaaagaatccgctaatttatcatctgtc
gataccacacctaaagaaaatccaaagagaagccttaggcggaaaaagcctttcgaaaga
gtacaagctttatctactgccgaagctccttcttgctcattagatttggattacaatgaa
gctgcagctgtgctcaataggttatacaagctcagtcccacaactactgaatccgatacc
gaggacagcgataatactccagtgaaaatggttcctagagggaggaggaccaagactagt
aaaaagcctgaaatcagaaaggtggttgatgtagtgaggggtcaacataaaaaggtgcat
cgattgacccttgaaaatcggattcatttgaaaaataacaaggatgttgcagttgttacg
tcaacaaggctgagaaagcatgccaaggtcaatgaagatgaaaacattaacaaactggtt
aaagaccactcgccttctacggatttaggcagcttagattggaagaaaatgaagatcccg
cctgttcttccttcttcagagcatactcggctattcaagttattacaaactatgaaggtg
attcttgcagtgaaagaggatttgcagaatgttttggaaagggaaccaacagatggagag
ttagcggaggcaacaaacatgaatgtatcgcaattgaggaagcaacttggagttggacaa
gcagccagaaataaattgatcaagcataatcttcgacttgtgttgtttgtcatgaacaaa
tattttcaagagtttgcaaatgggcgaaatttccaagatttttgccaggcaggagtgaag
ggcttgataaccgccgttgaccgctttgaaccgggaagaaaattgcaactctcaacatac
gctttattttggatacgacatgccatcatacgctccatgaccctctcaagtttttttaaa
gtcccctttggccttgaatcggttagaatagaaatacagaaggcaaaaaagaagctgtgg
tttgaccttatgagaccgccaagtgaagaagaaatagcaaagaaagctggaatttccctt
gaaagataccgtgaagtaaaaaaggcatcgacaccagttctttctctcaacaggaagaat
ccagttacacaagaagaatttattaacacgttcgcagataatgatggtggtggtgatgat
gagaggcgacaaattgctcttcttaggctcgcactggatgatgtgcttgattctctgaaa
ccgaaggagagcgtggtgattagacaaagatatggactggatggtaaaggcaatagaaca
ctgggagagattgcgggtaacttgaatatatcaagggaaatggttagaaaacatgaagtt
aaggctcttatgaagctcaaacatccagctcgagttgagtatttacgccactatctcttg
taa
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