Erigeron canadensis (horseweed): 122605417
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Entry
122605417 CDS
T07610
Name
(RefSeq) paired amphipathic helix protein Sin3-like 2 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecad03036
]
122605417
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
122605417
REST complex
122605417
Heterochromatin formation proteins
Other heterochromatin formation proteins
122605417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
122605417
NCBI-ProteinID:
XP_043634300
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All DBs
Position
6:33401296..33411014
Genome browser
AA seq
1322 aa
AA seq
DB search
MKRIRDDGYGNTNSQFKRPFASSRAESYSQPPAPGGGEGAGGAVTAVAGGNGGGSSAQKL
TTNDALTYLKEVKDMFQDQREKYDMFLDVMKDFKAQRIDTTGVIARVKELFKGHNNLIFG
FNTFLPKGYEITVIEDDETPPKRTVEFEEAISFVNKIKKRFQNDDRVYKSFLDILNMYRK
EHKGISEVYQEVASLFDDHPDLLDEFTRFLPDASAAASAHQASLRHSQQRFDERSSAVAP
LRPGQIDKRGRRDRVNAERDPSPDVDDKSMVKLHKEQRKRAEKESRDRRSSDQDYKDHDL
DSNKDIHRAEKRKSARKAEDFVVHSGSAPYDDKDAVKSMYSHEFTFCENVKNRLRNSDDY
QAFLKCLHIYSTEIITKKELQTLVADLLGKHTDLMEGFSAFLEHCENIDGFLAGVMDKKA
LWNVSKSTRTEEKERENRREIDANKEKDKYKEKYWGKSIQELDLSDCQRCTPSYRLLPDD
YPIPSVSQRSELGTQVLNDLWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLE
SVNSATKRAEELLNSINDHSIGSEGSVRIEDHFSALNLRCIERLYGDHGLEVMETLRKNP
SVALPVILIRLKQKQDEWTKCRADFNKVWADIYAKNHYKSLDHRSFYFKQQDSKNLSTKC
LVAEIKEIKEKSQKDDDVLLSIAAGNRHYIMPNLEFNFTDKDIHEDVYKLIKYSCEEICT
TKEQLDIVLRLWTTFLEPMLSVPTRPCNSDGLEDVETSTRGTTKNEGESDASPGADSVTF
SIKQAKPACNGDYNASPKRIDSNKNILVNGATSVKEDGSRLEKDVKNVSVGDKAPLTGRD
ATSSRPNNVDEDGHEVKSNTNVSSSQPGDISRSATVANGSSAKIEKEEGELSPNGDFDFM
EIDADADDEDSDNAPEGGDDVSGTESAADECSREEHIEDGDHDDLDGKAESEGEAEGIED
ANFVGGDTSLQSLDRFWLTAKPLVKRMVSPLHTGGIKDCNVFYGNESFYVLFRLHQVLYD
RLLSAKVFTTSAETKWRATKDTSPPDLYSRFISALYSLLDGSADNAKFEDDCRDIIGNQS
YVLFTLDKLIFKLVKQLQTVAGDETDNKLLQLFEYERSRNSEKYIDSVYYENAHIHIHDE
NIYRFQCSSSLSCLTIQLMDDGNEKPEVVAVSVDPNFAAYLQNDFLSVVPEKKESGIMLQ
RSKRQFLDMGESAALSAAMEGVQVVNGLEYKISCSSSKLITIGNIPHSLAHSSLLMLTCP
SLSWVSLLHVECWQISYVLDTEDFFSREKRKGRKASGSILSSSCHAQAKVQRFHRFLETS
IQ
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatacgagatgatggatatggtaacactaactctcaatttaaacgcccattt
gcttcttcccgggctgaatcatatagccaaccaccagccccgggaggaggtgaaggagct
ggaggagcagttacagctgtggcaggggggaatggaggtggtagcagtgcacaaaaactc
acaacaaatgatgcattgacgtatttgaaggaggtcaaagacatgttccaagatcaaaga
gagaaatatgacatgtttcttgacgtgatgaaagattttaaagctcaaagaattgatact
actggtgtcatagcaagggtgaaagaattgttcaaaggtcacaataatctaatttttggg
tttaacactttcttaccaaagggttatgagattactgttattgaggacgacgagacgcct
ccaaagaggacagtggagttcgaagaggctataagctttgtgaacaaaataaagaaacgc
tttcaaaatgatgatcgtgtatacaaatcgtttttggacatattgaatatgtataggaaa
gaacacaagggtattagtgaagtctatcaagaggttgcttcgctttttgatgatcatcca
gatcttcttgacgagttcacaagatttttgcctgatgcttcagctgctgcatctgcacac
caggcttcgttacgacattcccaacaacgttttgatgaacggagctcagccgtggctccg
cttagaccaggacaaatagataagcgaggccggagagacagagtcaatgctgaacgggac
ccgagtcctgatgtggatgataaatcaatggtgaaacttcacaaagagcagaggaaacgt
gctgaaaaggagagcagggataggagaagtagtgatcaggattacaaagatcatgatctt
gatagcaataaggatatccatcgtgctgaaaaacgaaaatctgcacgtaaagctgaagat
tttgtagtacattcaggttcggccccatatgatgataaagatgccgtcaaaagcatgtac
agccatgaatttactttctgcgagaatgtgaagaatagattacgcaattcagacgattat
caagcattcttgaaatgcctacatatctatagcacagaaataattacaaagaaggagtta
cagaccttggttgctgatttacttgggaagcacactgatcttatggaaggtttcagtgca
tttttggaacattgcgaaaacatagatggattcttagccggggttatggacaaaaaagcg
ttgtggaatgtttccaagtcaacaaggacagaggagaaagaaagggagaataggcgtgaa
attgatgctaataaagagaaggacaagtacaaagagaagtattggggaaaatctatacaa
gagcttgacctctctgattgtcagcggtgcactcccagctatagacttcttcctgatgat
tacccgattccatcagtaagccaaagatcagagctaggtactcaagtattaaatgatctc
tgggtatccgtgacttctggtagtgaggattattcattcaagcatatgcgtagaaaccag
tatgaagagagcttgtttagatgtgaagacgacaggtttgagctagatatgttattggag
tctgtgaattcagctactaaacgtgcggaggaactactgaatagcattaatgaccactca
attggttcagagggttccgttcgtattgaagatcacttctcagctctgaatttacgttgc
attgaacgactatatggggatcatggtcttgaagtgatggagacactgcgtaaaaaccca
tctgttgcattgcctgttatattgatccgtttgaagcagaaacaagatgaatggaccaag
tgtcgggcagattttaacaaggtttgggctgatatttatgcaaagaaccattataagtca
cttgatcaccgcagcttctatttcaagcaacaagactcaaagaatttgagcacgaaatgc
ttggtggctgagatcaaggaaataaaggaaaagagccaaaaagatgatgatgtgctcctt
agtattgctgctggaaatagacactatatcatgccaaatcttgagtttaatttcaccgac
aaggatattcatgaggatgtatataaacttatcaagtattcatgtgaagaaatttgcaca
accaaggaacaactggacattgtattaaggctttggactaccttcttggagccaatgctc
agtgtacctacgcggccctgcaattctgatggtcttgaagatgttgagacatctacacgt
ggtactaccaagaatgaaggcgagagtgatgcaagtccaggtgctgatagtgttactttt
agtattaagcaagcaaaaccagcctgcaatggggattataatgcttcaccaaaaagaata
gattcaaacaagaatattttggttaatggagctacttcagttaaagaggatggatcaaga
ctagagaaagatgttaagaacgtatctgttggggataaagcgccattaacaggacgcgat
gcaacctcatctagaccaaataatgttgatgaagatggccatgaagtcaagtcaaacact
aatgtttcttcatctcagcctggcgacatctcaagatctgcgactgtggcaaatggaagc
tctgctaaaattgagaaagaagagggtgaattatccccaaatggtgattttgattttatg
gagatcgatgcagatgctgatgacgaggacagtgacaatgctccagaaggtggtgatgat
gtttcaggcactgagtctgctgcagatgaatgctcaagggaagaacatatagaagatgga
gatcatgatgatcttgatggcaaagcagagagtgaaggagaggccgagggaatagaggat
gcaaactttgttggaggagacacgtcattgcaatctttagatcgtttttggcttacagca
aaaccattggtaaagcgtatggtttctccattacacactggtgggataaaagattgcaac
gttttttacgggaacgaaagtttttatgttctttttcggcttcaccaagtgttgtatgat
agactattgtctgctaaagtttttacgacatctgctgaaacaaagtggagagctactaag
gacacctctccacccgatttgtactctagatttataagtgctctttacagcctgcttgat
ggttctgctgataatgcgaagttcgaagatgattgtcgggatatcatcggaaatcaatct
tatgtgttatttacattagacaagctgatttttaagcttgtcaaacagcttcaaactgtg
gcaggtgatgagacagataacaaacttctccaactgttcgagtatgaaagatcacgtaat
tctgagaaatatattgattctgtatactacgagaatgcacatattcacattcatgatgaa
aacatatacagatttcagtgttcatctagcctatcttgtttgaccatccagctgatggat
gatggaaatgaaaagcccgaagtagttgcggtttctgtagatcctaattttgcagcctat
ctccagaatgatttcctttcggttgtgcctgaaaaaaaggaatctggcattatgttgcag
agaagtaaacggcaattcttggacatgggtgaatctgctgctctgtcagctgccatggaa
ggtgttcaagtggtcaatggcttggagtataagatatcttgtagctcgtcaaagcttatc
accattggcaacatccctcattcattggcacactcttcattgttgatgttaacgtgcccc
tctttaagttgggtgtctctcctccatgttgagtgctggcagatctcctacgtcctcgat
acagaagatttcttctcccgtgaaaaaagaaaaggaagaaaagcctctggaagcatacta
tcctcaagttgccatgctcaagcaaaagtacaacggtttcacagattcttagaaacctct
atacagtag
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