Erigeron canadensis (horseweed): 122605709
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Entry
122605709 CDS
T07610
Name
(RefSeq) BRCA1-associated RING domain protein 1-like
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122605709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122605709
04121 Ubiquitin system [BR:
ecad04121
]
122605709
03036 Chromosome and associated proteins [BR:
ecad03036
]
122605709
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122605709
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122605709
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
122605709
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
122605709
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
122605709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-HC5HC2H_2
PTCB-BRCT
RTT107_BRCT_5
PHD_NSD
PHDvar_NSD
BRCT_3
Motif
Other DBs
NCBI-GeneID:
122605709
NCBI-ProteinID:
XP_043634602
LinkDB
All DBs
Position
6:complement(33479048..33482590)
Genome browser
AA seq
486 aa
AA seq
DB search
MADSNCSDPNRRRKNQVKYTSPKKRGEIGRYVGNLESNSRRASGAKSFEAKRQKKTDDRS
HDTNDLASGDVATASGNSDTTFEKKKSCKNPSVILSKLDLKMSPCAFCRSSEKTEASGPM
LAYAQGKEVAGNVANFSKVIHVHERCRNWTPRIFFKDGLIQNLESEVRRANRLKCSRCTK
NGAGLGCYMETCTKTYHVPCALDICRWDSDDYLILCPIHTSCKFPTEVISKPRKQRIKSK
KSNKNLSSRTTLLDAGNDLVFCGSDLSSDEKLSLVELASSNGAVVSKYWRDNVTHVIAAT
DSNGACIRTLKVLMAILNGKWIVNMQWVNACREAGHPVKEEPYEVQLDNYGCSGGPKAGR
LRLKNNVPKLFNNMKFYFVGDFVEAYKSDFTILITTAGGIVSKTKEQLLSSLSYASTGVK
VNQVTLVIYNADTSDCSLFQDKETTKSQRLASAQDIAQEYAAHVVAHTWILESVAACSLL
PFTSRA
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggcagatagcaattgcagtgatccaaacagaaggcgtaagaatcaagtaaaatatact
tcgccaaagaaacgtggtgaaattggtcgctatgtgggaaatctggagtcaaatagtaga
agggcatctggagctaaaagttttgaagccaaaaggcaaaagaaaactgatgatcgatca
catgataccaatgatttggcctccggagatgtagctaccgccagcggtaattctgatacc
acttttgaaaaaaaaaaatcttgtaagaacccatctgtcattttgagcaagttggatttg
aaaatgagtccatgtgccttttgccgttcttcggagaagactgaggcaagtggaccaatg
ttagcatatgcccaagggaaggaagtggcgggcaatgtggccaacttctccaaggttata
catgttcatgaaaggtgtcgtaactggactcctcgaatttttttcaaggatggacttatc
cagaacttagaatcagaagtgagaagggctaacaggctaaaatgtagccggtgtactaaa
aacggagctggtcttggttgctacatggaaacttgcacaaaaacataccatgtgccatgt
gcattggacatttgcagatgggatagtgatgactatttgatactgtgtccaatccataca
tcgtgcaaatttccaacagaagtaatttcaaaaccccggaagcaacgcattaagagcaaa
aaatctaataagaatttgagttcccgcacaacattgttggatgctggcaacgatttggtg
ttttgtggttcagatctttcctcagatgagaagttatctcttgttgaacttgcaagtagt
aatggggcagtagtatcaaagtactggagagataatgtcacccatgtcattgctgctaca
gattcaaatggtgcttgcataagaacattgaaagttctgatggccattttgaatggcaaa
tggattgttaatatgcaatgggtaaatgcttgcagggaagcaggacatcctgtgaaagaa
gaaccgtatgaagttcagctagataactatggctgttctggcggtcccaaagcagggagg
ctaagactcaaaaataatgttccaaaacttttcaacaacatgaagttttactttgtagga
gattttgtagaagcttataagtctgattttacaattttgattacaactgctgggggcata
gttagcaagaccaaggagcaactactgtcatcacttagttatgcatctacaggtgtgaaa
gtgaatcaagtaactttggtcatttacaatgctgacacttcagattgttctttgtttcaa
gacaaagaaaccactaaatctcaaagattagcttcagcacaggatatagctcaagaatat
gcggctcatgtcgttgcgcatacttggattttagaatcagttgctgcttgtagtttactg
ccttttacatcaagggcctga
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