Erigeron canadensis (horseweed): 122605767
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Entry
122605767 CDS
T07610
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122605767
Enzymes [BR:
ecad01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122605767
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Ldl_recept_a
Motif
Other DBs
NCBI-GeneID:
122605767
NCBI-ProteinID:
XP_043634657
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Position
6:complement(34053989..34055581)
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AA seq
403 aa
AA seq
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MASNILALILLFSSLITINAFSSPQETSNLVINEVHQSINASRRNLGEFSCGTGNPIDDC
WRCDPNWDINRKRLADCAMGFGRNALGGRFGLFYVVKDPGNDDPVNPVPGTLRHAVIQDA
PLWIIFERDMVIQLRQELVMNSHKTIDGRGANVHIGNGPCITIHNAENIIIHGIHIHDCK
PAGNGNIRDSPHHSGWWLPSDGDGISILASKNIWIDHCSLSSCTDGLIDVIHGSTAVTIS
NNYMTHHDKVMLLGHSDSFTLDKAMQVTVAFNHFGEGLVQRMPRCRHGFFHVVNNDYTHW
EMYAIGGSADPTIYSQGNRYLAPNTRFDKEVTKRENAAESEWKSWNWRSEGDLMLKGAYF
TESGGDLSSPYIKDPNLIARPSTLVGAVTRNAGALICRKGSRC
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggcctccaatattttggcattgatcctcttgttttcttcactaataaccattaatgct
ttttcgtcacctcaggaaacctcaaatttagtaattaatgaagtccaccagagcatcaat
gcttctaggagaaacttgggtgagttttcttgcggcacaggcaacccaatagacgactgc
tggcgttgtgacccaaactgggacataaatcgcaaacgtctagctgactgtgccatgggt
tttggaaggaacgcgttgggtgggcggtttggtctattttacgtagttaaggaccctgga
aacgacgatccagtgaacccggttccagggacacttagacacgctgtgatccaagatgca
ccgttatggatcatctttgagcgtgacatggtgatacaattacgccaagagctcgttatg
aattctcacaagactatagacggaaggggtgcaaatgtgcatattggtaatggtccatgc
attactatacataatgctgaaaatatcataatacatggcattcatatacatgattgtaag
ccggcggggaatggtaacattagagattcacctcatcattcgggttggtggttaccatcc
gatggtgatgggatttctatacttgcaagtaaaaatatctggatcgatcattgttcgttg
tctagttgtactgatggactcattgatgttatacacggatctacagccgtcactatatct
aacaattacatgactcatcatgacaaagttatgttgttgggacatagtgatagttttaca
ctagataaagccatgcaagttaccgttgctttcaaccatttcggtgaggggcttgttcaa
agaatgccaagatgtagacatggatttttccatgtagtgaacaatgactatacacattgg
gaaatgtacgcaattggtggaagtgcggaccctaccatctatagccaaggcaatagatat
ttggcaccaaatacaagatttgacaaggaggtaaccaagcgcgagaatgcagcggaaagt
gaatggaagagttggaattggagatcagaaggggatttgatgttgaaaggggcgtatttc
actgagtcaggcggagatctttcttcaccatatataaaagatccaaatttaattgctaga
ccatcaacactcgtgggagcagtgactcggaatgcgggtgcacttatctgcagaaaaggg
tctcgttgctga
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