Erigeron canadensis (horseweed): 122606001
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Entry
122606001 CDS
T07610
Name
(RefSeq) formamidopyrimidine-DNA glycosylase-like isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122606001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122606001
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
122606001
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
122606001
DNA repair and recombination proteins [BR:
ecad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
122606001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
NFACT_N
PsbP_2
RepA_N
Motif
Other DBs
NCBI-GeneID:
122606001
NCBI-ProteinID:
XP_043634904
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All DBs
Position
6:8100836..8105682
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AA seq
390 aa
AA seq
DB search
MPELPEVEAARRAVRENCIGKKIVKAIVADDSKVIDGVSPRDFESSLISKKIVDVHRKGK
IMWIQLDSPPFPSFHFGMAGAIYIKGVAVTQYKRSAVTDTDEWPSKYSKVFIQLDDGLEV
SFTDKRRFAKVRLLQNPASVPPISELGPDALLEPMAEDELFKSLSKKKTVIKKILLDQSF
ISGVGNWIADEVLYQARIHPQQIASEISKEGCVALHNSLKEVLELAVEVGADSSQYPSNW
IFHSREKKPGNAFLDGKKIEFIEAGGRTTAYVPELQKLSGDQSTKVKVKPQKRSSKKIKD
AAEAESDDEEIAKSEKPKRGKKAQSSAKRPPAKRKSISSGSDEDTGDEEVKEKDDKRVAT
QKKTRGSAAKKKPSARKKSHGSESDESSDL
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccagaggtagaggcggcgagaagagcagttcgtgaaaactgtattggg
aagaagatagtcaaagcaattgttgctgatgattccaaggtcatcgatggcgtctcccct
cgcgactttgaatcatctttaatttctaaaaaaattgtggatgttcatcgcaaaggaaag
atcatgtggatccaacttgattctcccccttttccttcctttcatttcggaatggcaggt
gctatatatataaaaggtgttgcagtgacacagtataaaaggtctgcagttactgataca
gatgaatggccttctaaatattccaaagtatttatacaacttgatgatgggttggaggta
tcatttactgacaagaggcgatttgcaaaagtgcgcttacttcagaatccggcttctgtg
ccaccaatatccgagcttggtccagatgcattattggagccaatggcagaagatgagttg
tttaaatcactgagcaagaagaagaccgtcattaagaaaattttacttgatcagagtttt
atctcgggagttggcaattggattgcagatgaagtgctatatcaggcaagaatccatccg
cagcaaattgcctccgagatttcaaaagaaggctgtgtagcactgcacaactccctgaaa
gaggttcttgaactagcagttgaagttggggctgatagtagccagtatcctagtaactgg
atattccattctagagaaaagaagcctgggaatgcttttcttgatgggaagaagattgag
tttatcgaagccggaggcaggacaactgcgtatgtaccggagctgcaaaagctaagtgga
gaccaatcaacaaaagttaaggtcaaaccacagaagaggtcaagtaagaagatcaaagat
gcagccgaagcagaaagtgatgatgaagaaattgctaagagtgaaaaaccaaaaagaggg
aagaaagctcagagtagtgctaaaaggcctcctgcaaaacgcaagtctatcagcagtggt
agtgatgaggacacgggagatgaagaggtaaaagaaaaggatgataaaagagttgccaca
caaaagaagacgaggggaagtgctgctaagaagaagccttctgcaagaaagaaatcacat
ggaagtgaaagtgatgaaagttctgacctgtag
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