Erigeron canadensis (horseweed): 122606086
Help
Entry
122606086 CDS
T07610
Name
(RefSeq) E3 ubiquitin-protein ligase RNFT1-like isoform X1
KO
K22379
E3 ubiquitin-protein ligase RNFT1 [EC:
2.3.2.27
]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122606086
Enzymes [BR:
ecad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122606086
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122606086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-rbx1
zf-RING_5
Prok-RING_4
zf-C3HC4_4
zf-RING_6
zf-RING_16
RING_XB3-XBAT31
zf-RING_10
zf-Nse
Sina_RING
zf-ANAPC11
zf-C3H2C3
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
122606086
NCBI-ProteinID:
XP_043634979
LinkDB
All DBs
Position
6:42519979..42526421
Genome browser
AA seq
510 aa
AA seq
DB search
MRRFMETTGGDSTNSDVHSNPSSPTAALRRTISNNSSSPRTTSSPPFPIIRFLQAPVTTL
IEYSGVLRPRSSNNNDYNESESLIPVNNSNHRSHDHESRSSGSGRVSNGSTTATSSNDGG
ENSTDEVSIRILTGGEQDEHRGEAVERGESESVDSGDVTGGGNGNGNGGIDNSNGSNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNVDTAYQQRYDLQQVSRWIEQILPFSILLLIV
FIRQHLQGLFVTVYITAFMYKSNDILRKQTALKGERKLSVLAGYCILFMLHVIGVYWWYQ
NEDLCYPLFMVPPKAIPPFWDAVFTIIVNDTMVRQAAMAFKLVLLMYYKNGRGHSFRRQG
QMLTLVEYTLLLYRAFLPAPVWYRFFLNKEYGSLFSSLTTGLYLTLKLTSVVEKIGSFYA
ALKALSRKEVNYGSHATVEQQVSEAGDLCAICQEKMQAPILLRCKHIFCEDCVSEWFERE
RTCPLCRALVRPADIRSFGDGSTSLFFQLF
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgatttatggaaacaacaggaggtgattcaacgaattctgatgtccattcaaat
ccttcatctccgacggcggcgttacggagaacaattagtaacaattcgtcatcgccgaga
acgacgtcgtctccgccgtttccgattatcaggtttttacaagcacctgtaactactttg
attgagtattcaggtgtgttaagacctaggtcaagtaataataatgattataatgaatct
gagtctctaattcctgttaataatagtaatcaccggagtcatgatcatgaaagtaggtct
agtggttccggtagagttagtaatggtagtactactgctactagtagtaatgatggaggt
gaaaatagtacggatgaggtttcgatccggatattgaccggtggagagcaggacgaacac
cgtggtgaggcggtggagcgtggagagagcgagtcggttgattctggtgatgtaactggt
ggtggtaatggtaatggtaatggtgggattgataatagtaatggtagtaataataataat
aataataataataataataataataataataataataataataataataataataataat
aataataataataataataataataatgtggatacagcatatcagcagaggtatgatttg
cagcaggtttcgagatggattgaacagattcttccgttctcgatcttgttgttgattgtg
ttcattcgtcagcacttacaaggtctctttgttactgtctatataactgctttcatgtac
aaatcaaatgatattctacggaagcagactgctttaaagggggagagaaagttatctgtt
ctggcagggtattgtattctttttatgcttcatgtgattggagtttactggtggtaccaa
aacgaagatctttgttatcccttgtttatggttcccccaaaagcaataccaccattttgg
gacgctgtattcaccatcattgtaaatgatacaatggtacggcaggctgcaatggctttt
aagttggtattgcttatgtactataaaaatggcaggggccatagttttcgtaggcagggt
caaatgttgactctggttgagtacacactcttattataccgtgccttcttacctgcccct
gtctggtaccgtttctttttgaacaaagaatatggcagcctcttttcgtctttgacaaca
ggcttgtatttaaccttgaagctcacatctgttgttgaaaagattggatccttctatgcc
gcattaaaggcactatcacggaaggaggtcaattatggatcacatgcaacggtagaacag
caggtgagtgaggcaggagacttgtgtgctatctgccaggaaaagatgcaggctccaatt
ttgttgcgttgcaaacatattttttgcgaggactgtgtttcagaatggttcgaaagggaa
agaacttgtccactatgtagagctttggtgagaccagcggatatacgatcatttggagat
ggctcaacgagtttgttcttccagttattctag
DBGET
integrated database retrieval system
