Erigeron canadensis (horseweed): 122606463
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Entry
122606463 CDS
T07610
Name
(RefSeq) RRP12-like protein
KO
K14794
ribosomal RNA-processing protein 12
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecad03009
]
122606463
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
90S particles
Other 90S particles
122606463
Pre-60S particles
Other pre-60S particles
122606463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_RRP12_N
RRP12_HEAT
HEAT_GCN1
MMS19_C
TPR_IPO5
ParcG
XMAP215_CLASP_TOG
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
122606463
NCBI-ProteinID:
XP_043635247
LinkDB
All DBs
Position
7:complement(26896368..26906424)
Genome browser
AA seq
1117 aa
AA seq
DB search
MIPKKQPPQTTAEPMDATTTFTGDTDICDQLLTRYSKSTAPQHRHLCATAAATRSIIQSE
NLPPTPISYFAATIDSLSTISSTDPDAVSALSSFLSIVLPLVPEKSIGFDKAVEAVEIVV
GVVEKGFCDDGASVSSVKGLVKCLGVLLGFCNLEDWGSVELGFRMLVKYSVDKRPKVRKC
AQDCVVNVFKSFQSDSVKKTASKLVLKSFKTYMTSAVKTVSSRSADGSKDDNMSKGEHLE
VLHMLNLLKCLVPCLSSKEISKVVIELQTAINSKFSVLTRHVFDVMEEILRFLEARSTIP
DTEKIVTTLSKYISTRQNPVDTLFSAAALLENFLTKFQVGDPNKWNSHYSLIIGSIAGLL
TSEATAAKASNILKEMISRHVDVEILLSSETPADENDGESKESQIVKSLCDSLLKVLNTR
GIPNEHTLVVISALFLKLGKNSDTYMGSILLKLSNVMTTASGTTPDVKHLQDCLGSAVIA
MGPEKLLAILPISLDINDQTCSNTWLIPILKDYVVGSSLGFFIETIVPLAYSFQDACQKV
KKSVIREELQAHASGCWGLLPAFCRYPNDTHKKFQSLAELLIPCIRKDAFMLENIAIALQ
LLLKQNRSFTGADQCDDGASKLPKMSYSKRVATKNIKVLASCSEDLLKAFTKVFFKVSLK
KRGFLKDTIGCLALITDSSAIKTIFLSALKRLERNVPVDKVNAKRCLILELASSVVGAAS
MDLIDLIYNFIKQSLQEEDGNIQREAYATLYGILEKSPEFRSSKFEELMDLLLGLKSPED
VVSVRWRFSCFRNLLIHSIEISLDGENAYGFRMLNEVIVTLKDAKEESRKVAYDILLGMS
STLQKMPSSLEKGPYYDFISMIMGYLSGSSPHIKSGAVSALSLVIYNDSKVCNLMPDLVP
SILELLHSKAIEVIKAVLGFLKVLVLSLQVKDLQNFLSDILSGLLPWSSVSRHHFKTKVT
VILEIMMRKCGSASVKSLVPEKYRDFVKNVLENRQGKTTSQEADTTEKEAVSLDTNPKGR
ERRKTMATGSFSKKEYSTDTRKRKRDDKPSHEPRKFSPGEKSVHRKKEVKHVDHAKSAEN
PSQGGKRKNTNFKKDKSSGAKRQKQWSKESTRKASVT
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgattcccaaaaaacaaccaccacaaaccaccgctgaaccaatggacgccaccaccacc
ttcaccggcgacacagacatctgcgaccaactcttaacccgttactccaaatccaccgcc
ccacaacaccgccatctctgcgcaaccgcagccgcaacccggtccataatccaatcagaa
aatttacctccaacacccatttcatatttcgccgccacaattgactcactttccaccatt
tcctcaactgacccagatgccgtttcggctttatcttcgttcttgtccattgtattgcct
ttagttcccgaaaagagtatcgggtttgataaggcggtcgaggcggttgaaattgttgtt
ggggttgttgaaaagggtttttgtgatgatggggcttcggtttcgagtgttaagggtttg
gttaagtgtttaggggttttgttggggttttgtaatttggaggattggggttcggttgag
ttggggtttcgtatgctcgttaaatattcggttgataagcggccgaaggtcagaaaatgt
gctcaagactgtgttgtgaatgtcttcaagtcttttcaatcagatagtgtcaagaaaact
gcaagcaaattggtgttaaaatcatttaaaacttatatgacatcggctgttaaaacagtt
tcctcaagatctgcagatggatcgaaagatgataatatgtcaaaaggtgaacacttggag
gttcttcatatgttaaatttattgaaatgtctggtcccttgtttgtcaagcaaagagata
tcaaaagtcgttatagaactacaaacagctatcaattcaaagttctcagtattaacaaga
catgtttttgatgtaatggaagagatacttcgatttctggaagccagatctacaattcca
gatactgaaaagatagtcacaacactttctaagtatatatctacgagacagaatccagta
gacacacttttttctgcagcagctttacttgagaattttcttacaaaatttcaagttgga
gacccaaacaagtggaacagccattattctttaatcatcgggtctatagcaggtctactg
acatccgaagctacggctgcaaaggcttcaaatatattaaaagaaatgattagccgtcat
gttgacgtagagatccttttgagttcagagacacctgcagatgagaatgatggtgaatca
aaggaatcacaaatagtgaaatctttatgtgattctcttcttaaagttctcaatacccgg
ggaataccaaatgagcatactttggttgtcatctctgctttatttctcaaacttgggaag
aattctgacacttacatggggagcatacttctgaagctttccaatgttatgacaactgca
tccggaactacccctgatgtaaagcatcttcaggattgtttgggttctgctgtaattgct
atggggccagagaaattacttgctattttacctatttctcttgacatcaatgatcaaacc
tgctcaaatacctggttgatacctattttgaaagattacgttgttggatcatctttgggg
ttctttatagagactatagtgcctctagcttattcctttcaagatgcatgccaaaaagtt
aaaaaatcagtaattcgagaagaactgcaggctcatgccagtggctgttggggattattg
ccagccttttgtcgctatccgaatgacacacataaaaaatttcaatctttggcggaactt
cttattccatgcattagaaaggatgcttttatgcttgagaatattgccattgctttgcag
cttcttctgaagcaaaacaggagtttcactggtgctgatcagtgtgacgacggggcctcc
aaacttccaaagatgagttactcaaagagagttgctactaaaaacatcaaggtgttggca
tcatgttcagaggatttgcttaaggcttttaccaaagttttctttaaagtgtcactcaag
aaacgtggttttttaaaggataccattggatgtttggcactcatcaccgattcttcggct
attaagacaatttttctttcagcacttaaaagattggagcggaatgttcctgtagataaa
gtaaatgcaaaaaggtgcctgatacttgagctagcatcatctgttgttggtgcagctagt
atggatcttattgatctcatatacaactttatcaagcagagtttgcaggaagaggatgga
aacatccagagggaagcatatgccactctgtatggaatcttagagaaatctcctgaattc
cgctcttcaaagtttgaggaactgatggacttattacttggtttgaagtctcctgaagat
gttgtttcagttagatggcgcttttcgtgcttcaggaacttgttaattcattcaattgag
ataagtttggatggagagaacgcctatggttttcgtatgctgaacgaagttatagtgaca
ttaaaagatgccaaagaagaaagtagaaaagtggcttacgatatcctcctggggatgagc
tctaccttgcaaaaaatgccgtcctcacttgagaaaggaccttattatgacttcatcagc
atgataatggggtatctttctggatcttctcctcacataaagagtggtgcagtctctgcg
ctatctttagtgatatataacgactcaaaagtatgcaatttgatgcctgatctcgtgcca
tcgatcttggagttgctgcatagtaaagccatagaagttataaaggctgttttaggtttt
ctcaaggtattagttctgagccttcaagtgaaagatttgcagaatttcttgtctgatatc
cttagtggacttctgccatggtcatctgtttctcggcatcattttaaaacaaaagtaaca
gttatcctggagatcatgatgaggaagtgtggttctgcatcagtgaaatctctagtgcct
gagaaataccgagattttgttaagaatgtcttggagaaccgtcaaggcaagactacttcc
caggaagctgatacaactgaaaaagaagcagtatcattggatacaaatcccaaagggagg
gaaagaaggaaaactatggccaccgggagtttctccaagaaagaatattcaacagatacc
cggaagagaaagagggatgataaacctagccatgagcctcgtaaattttcacccggggaa
aaaagtgttcatagaaagaaagaagtaaaacatgtcgatcatgctaaatctgcagagaac
ccatcacaaggtggcaaaagaaaaaacacaaatttcaaaaaggataaaagttcaggtgct
aagagacagaagcagtggtcaaaagaaagcacgagaaaagcatcagtcacttga
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