Erigeron canadensis (horseweed): 122606709
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Entry
122606709 CDS
T07610
Name
(RefSeq) uncharacterized protein LOC122606709 isoform X1
KO
K06100
symplekin
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122606709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122606709
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122606709
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122606709
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122606709
U7-dependent histone pre-mRNA processing factors
122606709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
Hid1
Motif
Other DBs
NCBI-GeneID:
122606709
NCBI-ProteinID:
XP_043635495
LinkDB
All DBs
Position
7:complement(39007851..39020945)
Genome browser
AA seq
1365 aa
AA seq
DB search
MVESISREKLAGLIQSAKTSTDIPSKLDTLFQLKHHLNLLTEQQQQDDEEGDELLVSDLL
PQLILHFRTDRSSPVRLSVAQIAGDVGLSYTHLLPEIVPLFITLLRDATPAVARQSITCA
ITLFRRVLTKIAIQGLFSTELDDALESSWAWMLKLKDEIYAMSYQPETDGRKLLALKFVE
AVTLLYTADPSASAEPPPSDHTSGDEFNIAWLRGGHSILNVGDLSVEASRNLGLLLDQLR
YPAVKSLSNMVVIVLIKSLSTIATKRPAFYGRILPVLLGLDPANCAVKAGRVSGVHHTLK
NAFLSCLKCTHPGAAPWRDRLVGSLKEMKAGGLAEEALQQVSRGNSSTARDVKPSIEVCD
AVHLPAVRKRPEVKDDDVPVKRAKLTPTLNDDLSSSSKVKGNVDNGRVQQLVAMFSSLVA
QGEQSASMLEVLISSISADLLAQVVMANMPNLPLVRPKQEGDVELLKTGSQDNDLSVYLT
NMLSRSTTSENTHSALETHIDEKPEHEGELPAAKDAVLLQFAAKDSVLPHSAMEQDLILS
EPTADIASVMSVSLAIPCENTNVGELENGIPGLDSSTRDDDMPDIQVDAAMISADLEENS
QEQVTKLGTSSMDLVPSLSTEKSEELSPKAAMAEANSINSSTATSIQFTPKVVLPKMSAP
VIGLTDEQKDHLQRSAFIRIIDAYKHIAVSGGSHLRFSLLSHLGAEFPLELDPWEALQTH
IRSDYTSHEGHELTLRVLYRLFGEAEADHDFFSSTTATSVYEMFLLKVAEILRDSFPAND
KSLSILLSEVPYLPKSVLKMLECLCVPGNSDKNEELHSGERVHQGLSIVWSLILHRPPTR
DVCLKIALQSAVHHLEEVQTKAIRLVANRLYPIPSISQQIEDFAKEMLLSAMNGDHLIDT
ASADESNAELAKDVMEKHLNESVSAITKDCTSEAGQPQSESIPSPSITDAQRCMSLYFAL
CTKKHSLFRQLLIVYKNMSKAAKQAITVQIPKLVRTIGPSPQLLEIIADPPAGSENLLMQ
VVQTLTDGAVPSPDLLATIRKLYETKLKDAEILIPVLPFIPKDELLQIFPRFVNLPVDKF
QTALSRILQESSQSGSVLTPAEVMIGIHGIDPEKDGIPLKKVTEACNTCFQQRQIFTQQV
LAKVLNQLVEQIPLPMLFMRTVIQTIGAFPSLVDFIMEILSRLVSKQIWKNQKLWVGFLK
CAQLTKPQSFSVLLQLPPAQLEVALNKQPVLKGPLASYASQPDIRSSLPRSTLAVLGIPQ
DSQEASRGQMTPLTQSQAQSHTESQAQSQTVSQAQSLTESQAQSLTESQAQSQEQSQAQS
QTQSQAQSQSQAQSQTQSQAQSQTVDTGNSEKEVVTEEPKLSSIR
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atggtggaaagtatatcacgggagaagctggccggtctgattcagtcggccaaaacatca
actgatataccttcaaaactggacaccttatttcaactcaaacaccacttgaatctcctc
accgaacaacaacaacaagacgatgaagaaggtgatgaattattagtctcggacctcctt
cctcaacttattcttcactttcgcaccgaccgctccagccccgttcgcctttccgttgct
cagattgctggtgacgtagggttaagttacactcatttgttacccgagatcgtgccttta
ttcatcactctattacgagatgctacccccgcggttgccagacaatccattacctgtgct
atcactttgttccgtcgtgtccttaccaaaatcgctatccagggtttgttttctactgag
ttagatgatgctctcgagtcttcatgggcatggatgttgaagcttaaagacgagatatat
gccatgtcctaccagcctgaaaccgatgggaggaagctgcttgcgctaaagtttgttgaa
gccgttacgcttttatatacagctgatcctagtgcttctgctgaaccccctccctcggat
catacttctggagacgagtttaacatagcatggcttcgtggaggccattccatacttaat
gttggtgatttatcagttgaagctagtcggaatttgggtttgttgcttgatcagttaaga
tatccagccgtgaagtcactcagtaatatggtggtcatcgtgctaattaagagtctttcg
accattgcaacgaagcgacctgcattttatggacggattcttccagttttgcttggtcta
gatccagcaaactgtgctgtgaaagcgggtcgagtttctggggtgcatcatactttaaag
aatgcattcctctcctgcttgaaatgcacacacccgggtgctgcaccgtggcgagatcgt
ttagttggatcacttaaagaaatgaaagctggagggttggctgaagaagcccttcaacaa
gtttctcgtggtaattcatctactgcacgggatgtaaaaccctcaatagaagtatgtgat
gccgtgcacttgcctgcggttaggaagaggcctgaagtaaaagatgatgatgtacctgta
aagcgtgccaaactaacacccaccttgaatgacgatttgagctcatcaagcaaagtaaaa
ggaaatgtagacaacggacgggttcagcagcttgttgctatgtttagttcattggttgca
cagggtgaacagtctgcttcaatgttagaagttcttattagtagtatatctgcagactta
ctagcgcaagtagtaatggccaatatgccaaatcttcctctagttcgtcccaaacaagaa
ggagatgtagagttactcaagactgggtcccaagataatgatctatctgtatatctgaca
aacatgttatcacgctctactacttctgaaaatacacattctgcattggagacacacatt
gatgagaagcctgaacatgagggtgaactgcctgcagcaaaagacgctgtattacttcag
tttgcagcaaaagacagtgttttaccacattctgctatggagcaagatttgattctttcg
gaacctactgctgatatagcgtcagtaatgagtgttagcttagcaattccatgtgaaaat
accaatgtgggggaacttgagaacggaataccaggtctagattcctcaactcgggatgat
gatatgcctgacatccaggttgatgctgcaatgatttctgctgacttggaagaaaatagt
caagagcaagttaccaaattaggcacttcatcgatggatttagttccttcattgtctaca
gaaaagtctgaggaacttagtccaaaagcagctatggcagaagcaaacagcatcaactcc
tcaaccgcaacttctattcagtttacacctaaagtcgtcctgccaaagatgtctgcccct
gttattggcttgactgatgagcagaaagatcatttacagagatctgctttcatacgtatc
atcgacgcttataagcacatagcagtttccggaggttcacatcttcgcttctcgttactt
tcacatttaggagccgagtttcctcttgagttggatccttgggaagctctgcaaacacac
atacggtcagattatactagtcatgagggccacgagttaaccttacgtgttctgtataga
ttatttggggaggccgaagcagaccatgatttcttttcttcaacaacagcaacttctgta
tatgaaatgttccttctaaaagtggcagaaatactcagagactcttttccagcaaatgat
aaatctttaagtatcttgctaagtgaagttccttatctgcctaaatcagttcttaagatg
ttagagtgcctgtgtgttcctggaaacagtgataaaaatgaggagttgcacagtggagag
agagtccatcaaggtctcagtattgtttggagcttaattctgcatagaccaccgactaga
gatgtttgcttaaaaattgctttacagagtgcagtgcaccacttggaggaagtgcaaaca
aaggcaatacgattggtggcaaacaggctttaccctataccgtctatttctcagcaaatt
gaagattttgcgaaagaaatgctgttatctgcaatgaacggtgatcatttgattgatacg
gccagtgctgatgaatctaatgcggaattagcaaaggacgttatggaaaaacatttaaat
gagtcagtaagtgccatcaccaaggattgtacctctgaggccggtcaaccacaatccgaa
agcattccatccccttcaataaccgatgcacagcggtgtatgtcactgtattttgccctt
tgtacaaagaaacattctcttttccgtcaacttttaatcgtctacaagaacatgtcaaaa
gctgcaaagcaggcaattaccgtccaaatacccaaactagttcgcaccattgggccttca
cctcaacttcttgaaattattgctgatccacctgctggaagtgagaaccttctgatgcag
gttgtgcaaacgttaacagatggggctgttccttctcctgatttgctagctaccattaga
aagttatatgaaacaaagttgaaggacgcagagattcttatcccggtgttaccgttcata
ccaaaagatgagcttcttcagatctttccacgctttgtaaatcttccagtggataaattc
cagaccgcactttctcgtatcttacaggaatcatctcagagtggttcagttcttacacca
gctgaagtgatgattggcatccatggcattgatcctgagaaagacgggattccccttaag
aaggttacggaagcatgtaacacttgctttcagcaacgacagatatttacccaacaagtt
ctagcgaaggttttaaatcaactggttgagcagattcctcttccaatgctattcatgcgc
actgtaatacagacaattggtgcatttccttctctggtggatttcataatggagatttta
tctcgtctggtgagcaagcagatttggaaaaatcaaaagctttgggtaggattcttgaaa
tgtgctcagttaaccaagcctcagtctttcagtgtgctactgcagcttcctccagcacaa
cttgaagttgcattgaataaacaacctgtactaaaaggtccattggcttcatatgcaagc
caaccagacattcgatcttcacttccaaggtccacactggcagttcttggaattccacaa
gactctcaagaggcaagtcgggggcaaatgaccccactgacacagtctcaggctcagtca
catacagagtctcaagctcagtcacagacagtgtctcaagcacaatcgctgacagagtct
caagcacaatcactgactgagtctcaagcacaatcacaggagcaatctcaggcacaatca
cagacacagtctcaggcacaatcacagtctcaggctcagtcacaaactcagtctcaggct
caatcgcagacagtagatacaggcaattcagagaaagaagtagtgactgaggaaccaaaa
ctatcaagtatcagatga
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integrated database retrieval system
