Erigeron canadensis (horseweed): 122606798
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Entry
122606798 CDS
T07610
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03015
mRNA surveillance pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122606798
09123 Folding, sorting and degradation
03018 RNA degradation
122606798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122606798
03041 Spliceosome [BR:
ecad03041
]
122606798
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122606798
mRNA cycle factors
Stress granule specific factors
122606798
Spliceosome [BR:
ecad03041
]
Complex C
Other components
Complex C specific factors
122606798
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_ACIN1
RRM_MUD2_C
RRM_7
RRM_3
SET_assoc
RBD_DGKtheta
HPS3_C
Motif
Other DBs
NCBI-GeneID:
122606798
NCBI-ProteinID:
XP_043635589
LinkDB
All DBs
Position
7:7844719..7850218
Genome browser
AA seq
666 aa
AA seq
DB search
MAQIQVQTPPPTTTPPTPTTLSGPNNGVVAAAAAAAAVVAAGSGNQSFGTTSLYVGDLES
NVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNSNDAARAIDVLNFNAVNGK
PIRIMYSHRDPSIRKSGTANIFIKNLDRSIDNKALHDTFSSFGNILSCKIATDGAGQSKG
YGFVQFEVEDSAQSAIDKLNGMLINDKQVYVGRFLRKQERDSTLGRTKFNNVYVKNVSET
TTDEDLKKTFGEYGTITSAVIMRDSDGKSKGFGFVNFDSADDAANAVDALNGKKFDEKEW
FVGKAQKKSEREVELKNRFEQTAKEAIDKFQGVNLYVKNLDDTIDDEKLKELFSEYGTIT
SCKVMRDTSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRARLQA
QFSQMRPVAMAPSMMAPRPMYPPGAPGMGQQLFYGQAPPAMIPQQGGFGYQQQLVPGMRP
GGVPIPNFFVPVVQQGQQGQRLGGRRGGGPVQQNQQPVPMMQPQMLPRGRMFRYPGRNAA
DGNMGGGMLPVPYDMGGILPRDGGMQQSMPITALASALANAPLDQQRLMLGENLYPLVDQ
LEREHAAKVTGMLLEMDQTEVLHLLESPEALKNKVAEAMDVLRNVQQVNSPAAQLASLSL
NENLVS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggcacagattcaagtgcagacaccgccaccgaccacaaccccaccaacaccaacaacg
ttgtccggcccgaacaacggtgtggtggctgcagcggctgcagcggcggctgtagtggcg
gcggggagtggtaatcagagttttggaacgacgtcgctttatgtaggggatcttgagagc
aatgtgacagattcacaattatatgatttgtttaatcaagtgggccaggttgtttctgtt
agggtttgtagagatttgagtacaaggagatctcttggttatggttatgttaattatagt
aattctaatgatgctgcaagggctattgatgtactgaacttcaatgctgttaatggaaag
ccaattcgtatcatgtattctcatagggacccaagcatccgcaaaagtggaactgctaat
atattcattaagaacttggataggtcaattgacaacaaggcattgcatgatacattttcc
agctttggtaatatcctctcttgcaaaattgcaactgatggtgcaggccagtcaaagggt
tacggttttgtgcagtttgaggttgaagactctgctcaatctgcaattgataagcttaat
ggtatgctgattaatgacaaacaagtctatgttggtcgttttcttcgtaagcaagagcgg
gactctactttaggcaggaccaagttcaacaatgtctatgtgaagaacgtttccgaaacc
actactgatgaagatctcaaaaagacatttggtgaatatggaacaatcacaagtgccgtt
attatgagagatagcgatgggaaatccaaaggatttggatttgtcaacttcgatagtgca
gatgatgctgctaatgcggttgacgcattaaatgggaagaaatttgatgaaaaagagtgg
tttgttgggaaggctcagaagaaatcggaaagagaggttgaattgaagaatcgttttgag
cagactgctaaagaagccatcgataagtttcagggtgttaatttgtatgtcaagaacttg
gatgatactatcgatgatgagaagcttaaggaacttttctctgagtatggcacaatcact
tcatgcaaggttatgcgcgataccagtggaatcagcagaggatccggatttgttgccttt
tctacatctgaagaggcttcccgagctctttctgagatgaatgggaagatgattgtgagc
aaacctctctatgttgctcttgcacagcgtaaggaagaaagaagggcaaggttacaggca
cagttttcacaaatgaggcctgttgcaatggcaccttcgatgatggctcctcgtcccatg
tatccccctggtgcgccaggaatgggccagcaactattctatggccaagctcctcctgca
atgattcctcaacagggtggatttggttaccagcagcagcttgtacccggaatgaggcca
ggtggagttcctatcccaaatttttttgtaccagttgtccaacaaggtcaacaaggccag
cggcttggtgggaggcgtggaggtggtcctgtgcaacaaaatcagcaacctgttccaatg
atgcagccacagatgcttccaagaggacgaatgttccgttatcctggtaggaatgcagca
gatggaaacatgggtggaggaatgcttccggttccttatgacatgggtggtatattgcca
cgagatggcggtatgcagcagtcaatgcctattacagcattggcatctgctcttgctaat
gcacccctagatcagcaaagattgatgctcggtgagaatctgtatccattggtcgaccag
ctggagcgtgaacatgcagctaaggtgaccgggatgcttcttgagatggatcagacagag
gtgttgcacttgctggagtcaccagaagcattaaagaataaggttgcagaggctatggat
gttctgagaaatgttcaacaggttaacagtcctgctgctcagcttgcttcgctatctctt
aatgaaaacctcgtttcttag
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