Erigeron canadensis (horseweed): 122606838
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Entry
122606838 CDS
T07610
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122606838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122606838
03009 Ribosome biogenesis [BR:
ecad03009
]
122606838
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122606838
Spliceosome [BR:
ecad03041
]
Complex A
U2 snRNP components
U2 related factors
122606838
Complex B
122606838
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122606838
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
90S particles
Helicases
122606838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
SRP54
T2SSE
AAA_30
AAA_7
Flavi_DEAD
SLFN-g3_helicase
TrwB_AAD_bind
NACHT
Motif
Other DBs
NCBI-GeneID:
122606838
NCBI-ProteinID:
XP_043635650
LinkDB
All DBs
Position
7:complement(36584880..36590546)
Genome browser
AA seq
726 aa
AA seq
DB search
MGTERKRKVSLFDVVDDGTAAAAKINRANGGAAVHGTPMVNHWNGRAYSARYYEILEKRK
TLPVWQQKDEFFKVLRENQTLILVGETGSGKTTQIPQFVLEAVELESADKRKKFMVGCTQ
PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMTDPLLE
RYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKV
PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEV
GNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPVTEGGPAGRKIVISTNIAETSLTIDG
IVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNN
DLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDE
GNLTKLGEIMSEFPLDPQMGKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAADE
AKARFGHIDGDHLTLLNVYHAYKQNNEDQSWCYENFVNQRALKSADNVRQQLARIMSRFG
LKLCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPE
WVIYNEYVLTSRNFIRTVTDVRGEWIVDIAPHYYDLENFPQCEAKRVLEKLYKKREKDKE
ESKNRR
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggggacagaaaggaaacggaaggtgagtttattcgacgtggtggacgacggaacggcg
gcggcggcgaagatcaatagagcgaacggcggagcggcggttcacggaacgccgatggtg
aatcattggaatggacgggcgtattcagcgagatattacgagatattggaaaagcgaaag
actttgcctgtttggcaacaaaaagatgagttttttaaagttttgagagagaatcagact
ttgattttggttggtgaaactggtagtggtaaaactactcagatccctcagtttgtcttg
gaagctgttgagttagagagtgcagataaacggaagaagttcatggttggttgcacccaa
cctcgtagggtggctgcaatgtctgtttctcgtcgtgttgcagaggaaatggatgtcaca
attggagaagaagtaggttacagcattcgttttgaagattgcagcagtgccaaaactgtc
ttgaaatacttgacagatggtatgctactaagagaagccatgaccgatcctcttctggaa
agatataaagtgattatccttgatgaggctcatgaaagaacgttggctactgatgtttta
tttgggcttttaaaggaagtgctgaaaaatagacccgatcttaaactagtcgttatgagt
gctactcttgaagcagaaaaattccagggttatttctttggtgcaccattaatgaaagtt
cccggtaggcttcatcctgtggaaatcttttatacccaggagcctgaacgggactacctt
gaggcagcaatccggacagttgtacaaatacatatgtgtgaacctccaggtgatatactt
gtttttcttaccggagaagaggaaatagaagatgcatgtcgcaaaataacgaaagaggtt
ggtaatatgggagaccaggttgggcctgtaaaagtcgttcctttgtattcgacgctccca
ccagctatgcaacaaaagatattcgagcctgctcctcctccggtaactgagggtgggcct
gctggtaggaagattgtgatttcgacaaacattgctgaaacatctttaaccattgatggt
atagtgtatgtcatagacccaggttttgcaaagcagaaagtttataatccacgtgttcgt
gttgagtctttgttggtttctccaatctcaaaggcgagcgctcaccagagatctggtcgt
gccgggagaacacaacctggtaaatgttttagattatacacggaaagaagttttaataat
gaccttcagcctcaaacctacccggagattcttcgctcgaaccttgcaaatacggttctt
actctgaagaaacttggtattgatgatctagttcattttgattttatggatccgcctgct
cctgagactttgatgcgtgctttggaggttttgaattatctgggagcattggatgatgaa
ggaaacttgaccaaattgggtgaaattatgagtgaatttccactcgatcctcagatgggg
aagatgctggttgtgagccctgaatttaactgttcgaatgaaatcctttctatctcagct
atgctatcagtacccaattgcttcgttcggcctagagaagctcagaaggctgctgatgag
gcaaaagctcgatttggacacattgatggggatcatctcacacttttgaacgtatatcac
gcttacaagcaaaataatgaagatcaatcatggtgctatgaaaactttgtgaatcagagg
gcacttaagtctgctgataatgtgaggcaacaattagctcgtattatgtcccgttttggc
ctcaagttatgcagtacggattttaacagccgggactattacatcaacatcagaaaagct
atgctagcagggtattttatgcaggttgcccatttggagcgcactggacattatttgact
gtgaaagacaatcaagttgttcacttgcacccgtcaaattgtttggatcataagcctgaa
tgggtgatatacaacgagtacgttttaacaagcaggaatttcatacgtaccgttacagat
gttcgtggtgaatggattgttgatatcgccccacactactatgatcttgagaacttccca
caatgtgaagcgaaacgtgtgttggagaaactctacaagaaaagggaaaaagacaaggaa
gagagcaaaaacagaagatag
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