Erigeron canadensis (horseweed): 122606865
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Entry
122606865 CDS
T07610
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122606865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122606865
03009 Ribosome biogenesis [BR:
ecad03009
]
122606865
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122606865
Spliceosome [BR:
ecad03041
]
Complex A
U1 snRNP components
U1 related factors
122606865
Complex B
122606865
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
Pre-60S particles
Helicases
122606865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
122606865
NCBI-ProteinID:
XP_043635681
LinkDB
All DBs
Position
7:complement(1389734..1395765)
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AA seq
505 aa
AA seq
DB search
MSRYDSRSGDPSSYRDRRTDSGFGGGSSGGGSGHHLSSSKRDFESSEPQPKVDLDGLTPF
EKNFYVESPNVAKMTESEVEEYRRKREITVEGRDVPKPVKTFADARFPDYVMQEIVKAGF
TEPTAIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPILSHGDGPIVLVLA
PTRELAVQIQQEATKFGASSKIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES
HHTNLRRVTYLVLDEADRMLDMGFEPQMKKIVSQIRPDRQTLYWSATWPKEVEQVAKQIL
YNPYKVVIGSSDLKANHSIHQHVDIVTENQKYNKLVKLLDDIMDGSRILIFMDTKKGCDQ
ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMMATDVAARGLDVKDVKYVINY
DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILQEAGQKVNPDLAAMGR
GAPPPPGHGGFRDRGRGYSGGRSWN
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgttacgacagccgttccggcgaccccagctcataccgtgaccggagaactgat
tcagggttcggtggaggttctagtggtggtggtagtggacatcatctatcatctagcaag
agggactttgaaagttcggagccacaaccgaaggtggatttggatggattaactcctttt
gagaagaacttctatgtggaatctcccaatgttgcaaaaatgactgagagtgaggtggaa
gagtataggagaaaaagagaaatcactgttgaaggtcgcgatgttcctaagcctgttaag
acattcgctgatgcaagatttccagattatgttatgcaagaaatcgtcaaagcaggcttc
acagagcctactgcaatccaagctcaaggatggccaatggcattaaagggtcgggatctc
attggaatagctgaaacaggatctggaaagaccctttcttatttattgcctgccattgtg
catgttaatgcacaaccaatcttatctcacggagatggtccaatcgtattggtcttagct
ccgactcgtgaacttgctgtacagatacaacaagaggcaactaaatttggtgcatcttca
aagataaagaatacttgcatatatggtggggttccaaagggacctcaagttcgcgattta
cagaaaggtgttgaaattgttattgctacgcccggaaggttgattgatatgttggagtct
catcatacaaacttgagaagggtcacttatcttgtgttggatgaggcggacaggatgtta
gacatgggttttgaacctcaaatgaagaaaattgtgtcgcagatacggccagatcgtcaa
accttgtattggagtgccacatggccgaaggaagttgagcaagttgcaaaacagatcctt
tataacccatacaaagtggtaattgggtcttcagacttaaaagctaatcattcaattcac
cagcatgtggatattgtgaccgagaatcagaagtataacaaattggtgaaactgctggat
gatatcatggatggtagtcgaatattgatttttatggacactaaaaaggggtgtgaccaa
attactcgtcagctccggatggatggttggcctgcattatccattcatggagataaaagt
caagcagaaagggattgggttttatctgagttcaaagctggcaaaagtccaataatgatg
gccacagacgttgcagcccgtgggttagacgtgaaggacgtgaaatatgtgatcaattat
gacttccctggttcacttgaagattatgttcatcggattggccgaacaggaagagccggg
gcaaaggggacagcatacaccttctttacagcagcaaatgctaggtttgctaaagaactt
attgccatccttcaggaggctggtcagaaagtcaatcctgatctagcagcgatgggtcgt
ggtgcacctcctcctcctggacatggtggttttcgtgatcgtgggcggggttatagcggc
ggacgatcttggaactga
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