Erigeron canadensis (horseweed): 122606882
Help
Entry
122606882 CDS
T07610
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122606882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122606882
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122606882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
122606882
NCBI-ProteinID:
XP_043635699
LinkDB
All DBs
Position
7:35846608..35850671
Genome browser
AA seq
581 aa
AA seq
DB search
MAYSFPEEVLEHVFSFLTTSKDRNMVSLVCKSWFEMERWSRKKVFIGNCYAVNPRILIQR
FPEIKCIELKGKPHFADFNLVPDGWGGCVYSWIDYMSKDYPFLEEIRLKRMVVTDECLEL
ISKSFKGFKVLILSSCEGFSTDGLAAIAANCRNLRVLDLRECEVEDLSGHWLSHFPDSFT
SLECLNMSCLGSDISFSALERLVARSPNLKILRLNRAVPLEKLSTLLHLAPHLVELGTGA
YTAEIRSDVYTSLAEAFSGCKGLRGLSGFWDVVPAYLPAFNSVCSRLTSLNLSYATIQSP
DLTKIVSQCHNLQRLLVLDYIEDTGLNSLAMSCKDLRELRVFPSDPFVADANVLLTEEGL
VSVSEGCPKLQSVLYFCRQFSNSALISIARNRPNLTCFRLCILEPRAPDYLTLEPLDVGF
GAIVENCRDLRRLSLSGLLTDLVFEYIGTHAKKLDMLSIAFAGDSDLGLHHVLSGCESLR
KLEIRDCPFGDKALLANASKLETMRSLWMSNCAVSFGACKLLGQKMPGLNVEVIDERENL
NSIPESYPVEKLYIYRTVAGQRFDMPEFVRTMGKDAVYNLA
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcatttcctgaagaagtacttgaacatgtcttttcattcttaacaacttcc
aaagatagaaacatggtgtcattagtatgcaaatcttggtttgaaatggaaagatggtca
agaaagaaagtgtttataggcaactgttatgcagtcaatccaagaatcttgatacaaaga
ttcccagaaataaaatgtattgaattgaaaggaaaaccacattttgctgactttaattta
gtcccagatggatggggtggttgtgtgtattcttggattgattatatgtctaaagattat
ccctttttagaagaaattaggcttaaaagaatggtggttactgatgaatgtttggagttg
atttcaaagtcttttaaaggatttaaagtcttgattttgagttcttgtgaaggttttagt
actgatggacttgctgctattgctgctaattgcagaaatttgagagtactggatctgcgg
gaatgcgaagttgaggatctaagtggacactggttaagccacttccctgattcatttaca
tcattggagtgtctaaacatgtcctgtctgggttctgacatcagcttctcagcccttgaa
cgcctggttgctcggtcacccaatctcaagattcttcgactcaatcgagctgtacccctc
gagaaactttccacgctcctacatttggccccacatctagttgagttaggtacgggtgca
tacactgctgaaatccggtcagatgtttacacaagcctagctgaggctttttcaggctgc
aagggtctaagaggcctatcagggttttgggatgtggttccagcttatcttccggccttt
aactctgtgtgttctcggctaacttctttaaacttgagctatgcaactatacaaagtccc
gatcttacaaagattgttagccagtgtcataatttgcagcgtctattggtgttagattac
atcgaggatactggtctcaactcccttgctatgtcgtgtaaggacctaagagaactgaga
gtgttcccttctgacccatttgtagctgatgcaaatgtactcttaacagaagagggtctc
gtttcagtttcagagggttgccccaaacttcagtctgttttatatttttgtcgacaattc
tcaaactcggcattaatttccatcgctagaaaccgtcctaatctaacatgcttccggtta
tgcatccttgaacctcgagctcctgattatctgacattggaacctcttgatgttgggttt
ggagccatagttgaaaattgcagagatcttcgacgcctttcgttgtcgggtctcctaacg
gatcttgtatttgaatacattggaacacatgctaagaagttggacatgctttctatagct
tttgcaggcgatagtgatttggggttacatcatgttttatcgggttgtgaaagtttgagg
aagttggagattcgtgactgcccttttggggacaaggcgctcttggctaatgcttccaag
ttggagacaatgcgatccctttggatgtctaattgtgccgtttcttttggagcatgtaaa
ctacttggtcaaaagatgcctggtcttaacgttgaagttattgatgaacgggaaaaccta
aattcaatcccagaaagctatccagttgagaagctttacatataccgaacagttgctggt
caaaggtttgacatgccggagttcgtacgcacaatgggtaaagatgcggtgtacaatctt
gcttaa
DBGET
integrated database retrieval system
