Erigeron canadensis (horseweed): 122606885
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Entry
122606885 CDS
T07610
Name
(RefSeq) regulation of nuclear pre-mRNA domain-containing protein 1B-like
KO
K15559
regulator of Ty1 transposition protein 103
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122606885
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122606885
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CID
CTK3
CREPT
CCDC144C
WASH_WAHD
YkyA
Tropomyosin
ALIX_LYPXL_bnd
Motif
Other DBs
NCBI-GeneID:
122606885
NCBI-ProteinID:
XP_043635706
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Position
7:complement(25474397..25486034)
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AA seq
520 aa
AA seq
DB search
MSDDVFDGQMLADKLSKLNSSQQSIESLSRSCISHKKKAKQIVEIWHKSFKTAQRDQQVS
FLYLANDILQNSRRKGSSEFVNEFWKVVPSALKHVNEHGGENGKTAASRLVDIWHKRRVF
GSWGQNLKDEVLGKSPLPQLPTNGKTSNPIKIAKRDASSLRLKLAVGCIPEKIITAFHSL
HDENASEDTALNNCEGALRRFGDLERDIASQGVLPGSSLLDELQEQENVLQDCVNQLETA
ERTRTSLVSQLKEALQDQESKLDVIQSQLKVARHQIDHAVNLRKKVVSPSLPSEAASVDN
PASAQSVPTGTAQSVPTGTTTHATEEENKKAAAAAMAAKLAASTSSAQMLSSVLSSLVAE
EAASVGNGFNSSGFTSSSSAFPPEKRPKLETPTSIPDLTNSDVSSGYFTSIQTSFPPPPQ
SIGGTSSPANQFAQSSGLMMGGMPYPYVASSLPPPPPMPQHMAMGMMRPTNQPPQQQQQQ
QQQQQQAHPQQPSNGGYYRPPGIGFYGQNHQPSPPPVPRQ
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgatgtttttgatggacaaatgttggcagacaagctttctaaacttaacagt
tctcaacaaagtatagagtctttatcccgttcatgcatttcacataaaaagaaagccaaa
cagattgttgaaatatggcataagtcattcaaaactgctcagcgggatcagcaagtttct
tttttgtatttggccaacgacattttgcaaaatagcaggcggaagggaagcagtgagttt
gtgaatgaattttggaaggtcgtgccatcagccctcaagcatgttaatgaacatggtggt
gaaaatggaaagacagcagcatcaagactggttgacatatggcacaagaggagggtattt
ggatcctggggtcagaacttgaaagacgaagtgcttggtaaaagtccgctccctcagttg
cctactaatggaaagacttctaaccctatcaagatagctaagagggatgccagctcgctg
agactcaaattggctgttggatgtatcccagaaaagataataactgcattccattcgtta
catgatgaaaatgctagtgaagatacagctttaaacaactgtgaaggtgcacttcggcga
tttggagatttggagagagatattgcaagtcaaggagttttaccaggatcttcgttacta
gatgaactacaggagcaagaaaatgtacttcaagattgtgtcaatcaacttgaaactgct
gaaaggactagaacctcattggtttcacagcttaaagaagcactccaggatcaagaatcg
aaactggatgttattcaaagtcagttgaaggttgctcggcatcaaattgatcatgctgta
aatttgaggaagaaagtggtatcaccatctcttccaagtgaagcagcaagtgttgataac
cctgcatcagctcagtcagttcctactggaacagctcagtcagttcctactggaactact
actcatgctactgaagaagaaaacaagaaggcagctgcagctgctatggctgcaaaactt
gctgcttcaacatcctctgcacaaatgctttcatcggttctctcgtctttagtcgcagag
gaagctgcttccgttggtaacggatttaattcatctggattcacttccagttcatccgca
tttcctcctgaaaaaagacccaaattagaaacacccacatcaataccagatttaaccaat
tcagatgttagttcaggttattttactagtattcaaacatcatttccacctcccccacaa
tccatcggtggtactagctctcctgcaaatcaatttgctcaatcttctggtttaatgatg
ggcgggatgccatatccatacgttgctagcagcctacctccaccaccacctatgccacaa
catatggcaatgggaatgatgaggcccaccaatcaacctcctcagcagcagcagcagcag
cagcagcagcagcaacaggctcatccacaacaaccttcaaatggtgggtactacaggccg
ccaggtattggcttttatgggcaaaaccatcagccttcaccaccgcctgtgcctcgtcag
taa
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