Erigeron canadensis (horseweed): 122607147
Help
Entry
122607147 CDS
T07610
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122607147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122607147
03041 Spliceosome [BR:
ecad03041
]
122607147
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122607147
Spliceosome [BR:
ecad03041
]
Complex B
Other components
Prp19-related factors
122607147
Complex C
122607147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
ARM_TT21_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
122607147
NCBI-ProteinID:
XP_043636004
LinkDB
All DBs
Position
7:complement(1828015..1830699)
Genome browser
AA seq
852 aa
AA seq
DB search
MSSLNLLQVLRNPFNLRVWWRYLTELPFKERSVIYERALRALPGSYKLWHAYIRERVELV
RNLPVSDSRYQALNNTFERALVTMHKKPRIWIMYLASLTEQKLVTRTRRAFDRALRAFPV
TQHDRIWDKYLVFAKQRGVPIDMSLRVYRRFLKYDPGHIEDLIEFLLNSKLWQEAAERLA
GVLNDDSFYSTKHRLWLELCDLLTQHASDISGFNVDAVIRGGIRRFSDEVGRLWTSLADY
YIRRKLLEKARDVFEEGMTTIVTVRDFSVIFDAYSQFEESVLALKMDEDEENGVEADDDG
EDRLNVEKLEEKINRFWLSDKNDVDLRMARLEHLMDRRPELANSVLLRQNPHNVQQWHRR
VKIFTGDPTKQILTYTEAVRTIDPIKAVGNPLSLWVAFAKLYETHEDLANARVIFHKAVQ
VNYKVVDDLARVWCEWAEMELRHKNFKGARELMRGATAEPSAEVKRRVAADGNEPVQMKL
HKSLRLWTFYVDLEESLGTLESTRTAYERILDLHIATPQIIINYAMLLEDNKYFEDAFKV
YERGVNIFKYPHVKDIWVTYLSKFVKRYGKSKLERSRELFEHAIGMAPSQVVKALYLQYA
KLEEDYGLAKRAMRVYDQATKAVPANEKLSVYEIYIARAAEIFGVPKTREIYEQAIVSDG
LPDKDAMKMCIKYAELEKSLGEIYRAREIYVQSSCLAHSDGIFWKKWHDFEVQHGNEDTY
RDMLRIKRSVYDIMPQHTLVQKSTGEDQMAALERQLAPAAARKLGYVSGGVQESQKESGI
LQNQEEIDLPGGSDSDEEDGDGNVEIAQKDVPDAIFGGLIRKRKRDEEAENQNADGEARL
DALERIKRIASR
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctttgaacctattacaagtgctccgaaaccccttcaaccttagagtatggtgg
cgttatttaaccgaattgcctttcaaggaacgctcagtcatatacgaacgggcgctcaga
gcattaccaggcagttacaaactttggcatgcctatatccgagaacgtgtcgaactggta
cgtaatttgcccgtttcggattcccgataccaggctttgaataatacgtttgaacgtgcc
ttggtcactatgcataagaagcccaggatctggattatgtatctggctagtttgactgaa
caaaagttggtcactaggacgcgtagagcctttgacagggcgttacgtgcgtttcccgtt
actcaacatgataggatctgggacaagtatttggtttttgctaagcagagaggggttccg
atcgacatgtctttgagggtttatagacggtttttgaagtacgatccgggtcatattgag
gatttgattgagtttttgttgaattccaagttgtggcaagaggctgcggagagattggcg
ggtgttttgaatgacgatagcttctattccacgaaacataggttgtggttggagctttgt
gatttgcttacccaacatgcgagtgacatttctgggtttaatgttgatgcggttattcga
ggcgggattcgcaggtttagtgacgaggtgggtcggctgtggacttcgttggcggattat
tatatcaggaggaagttgttggaaaaggcgagagatgtatttgaagaggggatgaccacg
attgttactgttcgggattttagtgtgatctttgatgcctactcgcagtttgaagagagt
gtgcttgctttgaagatggacgaggatgaagaaaacggtgttgaggccgatgatgacgga
gaagatcggcttaacgtggaaaagttggaggagaagatcaacaggttttggctatccgac
aaaaacgatgttgatttgaggatggcgagattagagcatcttatggacagaaggccggaa
ctggccaatagtgttcttcttcgtcaaaatcctcataatgttcaacagtggcataggaga
gttaagatcttcacaggggatccaaccaagcagattctaacttatactgaagcagtacga
acgattgacccaatcaaagcggtcggcaatcccctttccttatgggttgcgtttgctaaa
ttgtatgaaactcatgaggaccttgctaatgcaagggtcatctttcacaaggctgtccaa
gttaactataaagttgtggatgatcttgctcgtgtctggtgtgaatgggcagagatggag
cttagacacaagaatttcaagggagcacgggaactaatgaggggtgctacagctgagccg
tctgctgaggtgaaacgcagagtggctgctgatggcaatgaaccggttcaaatgaagctg
cacaaatccctaaggctctggactttttatgtggatttagaagaaagtttaggcaccttg
gaatctacccgtactgcatatgaaaggatcttggatctgcacattgctacaccgcagatt
attataaactatgcaatgctgctagaggataacaagtactttgaggatgctttcaaggta
tacgaaaggggggtgaatatcttcaaatatcctcatgtgaaagacatttgggttacttat
ctctcaaaatttgtgaaacgatacgggaagtccaaacttgaaaggtccagagagctgttt
gagcatgccattggaatggccccttctcaagtggtaaaggccttgtatcttcaatatgct
aagttagaggaggattacggcctagctaaacgagcaatgagggtatacgatcaagcaaca
aaagccgtcccggctaatgagaagttgagcgtgtatgaaatttacatagcacgtgcagct
gaaatttttggagtccctaaaactcgggagatctatgaacaggccattgtttctgatggg
cttcccgataaggatgccatgaagatgtgcatcaagtatgctgagcttgagaagagtcta
ggagaaatttaccgtgcacgggaaatatatgttcaatcatcttgtcttgcacactctgat
ggtatattttggaagaagtggcatgattttgaagtacaacatggcaacgaggatacttat
cgagacatgcttcgtattaagaggagtgtttatgatattatgccccagcacaccttagtg
cagaagtcaactggagaagatcaaatggctgctttagaaaggcagttagctcctgctgct
gctagaaagcttggatatgtaagtggtggtgttcaagaatcacaaaaggaatcaggaatc
ctacaaaaccaagaagagattgatcttcctggagggagcgatagtgacgaagaggatggt
gatggaaatgttgagattgcacagaaagatgttcctgatgccatatttggtgggcttatc
aggaaaagaaaaagagatgaagaagcagaaaatcaaaatgcagatggcgaggcccgtctt
gatgcacttgaaagaattaaaaggattgcgtcaagataa
DBGET
integrated database retrieval system
