Erigeron canadensis (horseweed): 122607197
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Entry
122607197 CDS
T07610
Name
(RefSeq) zinc finger CCCH domain-containing protein 24
KO
K15332
tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecad03016
]
122607197
Transfer RNA biogenesis [BR:
ecad03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
122607197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
zf-CCCH
Methyltransf_25
MTS
RRM_1
Ubie_methyltran
Methyltransf_15
Methyltransf_4
Methyltransf_11
PCMT
Cons_hypoth95
PrmA
MKRN1_C
AviRa
zf-CCCH_2
zf_CCCH_4
Motif
Other DBs
NCBI-GeneID:
122607197
NCBI-ProteinID:
XP_043636061
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Position
1:complement(57671184..57676607)
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AA seq
783 aa
AA seq
DB search
MAAETLNSPPMATEALNTPATETATTPANGSSNLSEPPSNDEHGEKRKRPELKPDEKSDS
VNPLWKTTLCSYFRRTGAACSHGDTCKYAHGELELRLRPDNTWDPTSEKGKKQKLDKDGD
DVVMKKSSVAENDECSESGLDKCLVNLPLKWCSDSLKHFLDEEGVEYKSAKTRKGMIVGF
VTFETVEQVKTAIEKLQGKPVKNKILKIVDANPRSFDKNKKPAASSDNAGSADKVDGSTP
GSGRSARDAVTPLAHMSYEDQLEQKKKSIMQILKKLTRNARKACPDGVSQPEWIIQSREI
GGLACKLEGIIESPLVNGYRNKCEFSIGYSLQGKPTVGFLLGNFREGVTAVEEPSDCPNV
SKVGCKYADIFQNFLLSSTFPIWNRMNNSGFWRQLTVREGRAPSNSSNAESIESNISEVL
LMVQISSAGFESEAVNVELEKMAEAFVEGASTNSPFLPLTVLVVQDHQGVSNVAPADAPL
RSLPLTKSDSRAGKDSEVVAEARIQDYINNLRFCISPTAFFQVNTLAAEKLYSLAGDWAG
LGPNTLLFDVCCGTGTIGLTLAHRVGMVVGIEMNASAVADAKRNAEINGIKNCRFVCSKA
EDVMGSLLKEYLIKEPDESYDANIGNKEETSASEDLKDAPEGIDKEIKNLKKKEESKCVT
DSSSSELHQFENVVAIVDPPRVGLHPTVIKALRTHSGLKRLVYISCNPESLMANAIELCA
PSSDNNEKGNKKGRGWRNMSNASLALNRAKSMPNSVPFQPIKAMAVDLFPHTSHCELVML
LER
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgaaaccctaaactctccgcccatggcaaccgaagccctaaacactccagcc
acagaaacggcaactactccggcgaatggctcatctaacttatcggaaccaccatccaat
gacgaacacggggagaagcgtaaaagacccgaactcaagccggatgagaagtccgattca
gttaatccactatggaaaacgactctctgttcttacttccgccgaactggcgccgcgtgt
agccacggcgatacatgcaaatacgctcatggtgagttggagctccgactccgacccgac
aatacttgggacccgacttctgagaaaggcaagaagcaaaagttagataaagatggtgat
gatgttgttatgaagaagtcatcagtagcagagaatgatgaatgctctgaatctggactt
gataagtgtttggttaatcttcctttgaaatggtgctctgatagtttaaaacatttcctc
gacgaagagggggttgaatataagtcagctaagacaaggaaaggaatgattgtagggttt
gtgactttcgaaacagtcgagcaagtgaaaaccgcgattgagaagttgcaggggaagcct
gtaaagaataagatattaaagatagtggatgcgaatccgagatcttttgacaagaataag
aagccggcggcaagttcagacaatgcaggatcagctgacaaggttgatggttcaacccct
ggaagtggtagaagtgctcgggatgctgtgactccgcttgctcatatgtcttatgaagat
cagctggagcagaagaagaagtccatcatgcagattttgaaaaaacttactcggaatgca
cgcaaagcttgtcctgatggtgtctcacaaccagaatggataattcaatccagggaaata
ggcggtcttgcttgcaaactagagggtataattgaatcaccacttgtaaatggataccga
aacaaatgtgaattttctattggatattctctacaaggaaaacctacagtgggcttttta
ctcggaaacttcagggagggtgtaacagcagttgaagaaccttcagattgcccaaatgtt
tctaaagttggttgcaagtatgctgacatcttccaaaatttcctgctaagttcaaccttt
cctatatggaataggatgaacaattctgggttttggcgccaactaacagttcgagaagga
agggccccgagcaatagttccaatgccgagtccattgaatccaacatttcagaggtcttg
cttatggttcagatttcgtcagcaggcttcgaaagtgaagctgtcaatgttgaacttgaa
aagatggccgaagcttttgtggaaggagcttctacaaattcaccatttttgcctcttaca
gtacttgtcgttcaggatcaccaaggagtatcaaatgtagcaccagctgatgctccattg
cgctctcttccccttaccaaatccgatagtagagctgggaaggattctgaagttgttgca
gaagcaaggattcaagattatataaataatctccggttttgtatatccccaacagctttt
tttcaagtgaacacccttgcagcagaaaaattgtactcgcttgctggggattgggctggt
ctgggacctaatactctgctatttgatgtttgttgtgggactggaacaattggccttact
ttagcgcaccgtgttggaatggttgttggaattgaaatgaatgcttctgcagtagctgat
gcgaaaagaaatgcggaaataaatggcataaagaactgcaggtttgtctgctcaaaggca
gaggatgtgatgggatctttactaaaagagtacttgataaaagaaccagatgaaagctat
gatgcgaatattggtaataaagaagaaactagtgcttctgaagatcttaaagatgcgcct
gagggtattgacaaagaaataaaaaatcttaaaaagaaagaagagagtaagtgtgtaact
gacagcagtagtagcgagttgcatcaatttgagaatgtggtagccattgtggatcctcct
cgtgttggacttcatcccactgtgattaaagctctcagaactcattcgggtttaaagagg
cttgtctatatatcatgtaatcctgagagtttaatggcaaatgctattgagctttgtgct
ccatcttctgataataatgagaaaggaaacaaaaagggcagaggatggagaaatatgagc
aacgcgagtttggccctcaatagggccaaatctatgccaaattcagtgccatttcaaccg
attaaagctatggcagttgatctttttcctcacacttcacattgtgaacttgtaatgctt
cttgagaggtag
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