Erigeron canadensis (horseweed): 122607306
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Entry
122607306 CDS
T07610
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122607306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122607306
Spliceosome [BR:
ecad03041
]
Complex A
U1 snRNP components
U1 related factors
122607306
Complex B
122607306
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
122607306
NCBI-ProteinID:
XP_043636188
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All DBs
Position
7:25315690..25327502
Genome browser
AA seq
921 aa
AA seq
DB search
MENNPQNLASQALRPPTIGSVGSQSFGTNYSMQQFRPAVPAQPGHSYMQSASGAQQYRPM
GQPQMPQFSQSMQQRPGQPSHLSSSSQPPMSYMQPPQFQNSANTNSHVPSLGGPSYTMHP
PVVSTGGQPWMSSGNQGPVNVTPVTQIGQQPSTITPHQISSASQDAAADWQEFTAADGRR
YYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTTAEGKKYYYNKDTKQSKWTIPDELK
LAREQAEKEASRGTQSPATLIASSLDQLPASVSSANDVSSSPVAVTPIIPVANVVAESSS
LIHVAVTPVVSANMHSSPMDKSDNSSLHGAPKTLDGVSVQDTEEAKKGMAVAGKVNTTPS
EEKVADDEPFIYPTKQEAKMAFKSLLEESNVKADWNWEQAMRVIINDKRYGALKALGERK
QAFNEYLMQRKKLETEERRLRQRKAKEEFTKMLEESKELTSSMRWSKAMAIFEDDERYKA
VDRAGDREDLFQNYMVDLQKKERARAQEEQRQYRLEYRQFLETCGFIKVDTQWRKVQDRL
EDDERCTRLEKIDRLEIFQEYIRDLEKEEDEQRKLKKEHIKRAERKNRDMFRKLMDEHVI
SGMLNAKTQWCDYCQEVKASVAYEAVASNTSGSTPRDLFEDLVEELDKKYHEDKTRVKDA
IKLKKVPVLPTWTLEDFKAVVEEDIISSLSDINIQLVFEDLVERAKEKEEKEVKKRQRLA
KDFTDLLYDNKEINASSTWEECKQLFEESSEYRAIGDESLARETFEEYIARLVEKAKEKE
RKREEEKARKEEKEKRKEKERREKEKDREERDRSKDKERLKKDDSDSENLDVAVEHKEDK
RRDRKHRKRHQDDASSDKDEKDDSKKTRRHGSDRKKSRKHAYSPESDIESKHKKHKKESR
SKNGSHEELEDGEVGEDGEIQ
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataacccccaaaatctggcttcgcaggctctgcggccaccaacaattggatct
gttggctctcaaagttttggaacaaactattccatgcaacagtttcggcccgcagttcca
gcacaaccaggtcattcatatatgcagtcagcttcaggtgctcagcaatatcgaccgatg
ggtcaacctcagatgccacagttttctcaatcgatgcaacaaaggccaggtcagccaagc
cacctttcttcatcgtcacaaccgcccatgtcttacatgcagccaccacagttccagaat
tctgccaatacaaacagtcatgtgcctagcttgggtggcccttcatataccatgcaccca
cctgttgtctcgactggaggacagccttggatgtcttctggaaatcaaggtccagtgaat
gttacaccggtgactcaaattggacagcagccttcaactatcactcctcatcagatatca
agtgctagtcaagacgcagcagctgattggcaagagtttacagctgctgatggcagaaga
tattattataacaagaaaaccaagcagtcttcttgggaaaaaccgttggagttgatgaca
cctctggagagggctgatgcttctaccgtttggaaagagttcacaactgcagagggtaaa
aaatactattacaacaaggacacgaagcaatctaaatggacaatacctgacgagttgaag
ttggctcgtgagcaggctgaaaaagaagcttctagagggactcaatctccagccacttta
atagcctcctcattggatcaacttccagcttctgttagctctgcaaatgatgtttcttca
agccctgtagcagtgacacctattattcccgttgcgaatgtggtggctgagtcatcatct
ttaattcatgtagcagttacaccagttgtttctgccaacatgcattcttctccaatggac
aaatcggacaattcatctttacatggtgctccaaaaactttagacggtgtctcagtgcag
gacacggaggaagcaaagaaagggatggcagttgctggaaaggtgaacacaacgccatca
gaggagaaagttgctgatgatgaaccctttatatatccgactaagcaggaggcaaaaatg
gcttttaagtcattattggaggaatcaaatgttaaggctgattggaactgggagcaggct
atgcgagtgataataaatgataaaagatatggtgcactaaaagctcttggtgaacggaaa
caggcctttaatgagtacttgatgcaaagaaagaaattggagactgaggagagacgttta
aggcagagaaaagcaaaagaggaattcacaaagatgttggaagagtccaaggaattgaca
tcatccatgagatggagcaaagcaatggcaatatttgaagatgatgagcggtataaggct
gtagatcgagctggtgaccgagaagatctttttcaaaactacatggttgatctccaaaag
aaagagagagcaagagctcaagaagagcaacgacagtacagattagaatacaggcaattt
ttggaaacttgtggcttcattaaggtggatactcagtggcggaaagtccaagatcggttg
gaagatgatgaaagatgtacacgccttgaaaaaatcgatcgtttggagatttttcaggag
tacattcgtgatctggagaaggaggaagatgaacagaggaaactcaagaaggagcatata
aaaagggcagagcgtaaaaatcgtgatatgttccgcaagttgatggatgaacacgttatt
tctggaatgcttaatgctaaaacccaatggtgtgactattgtcaggaggtgaaagcatcg
gtagcttatgaggctgttgcttcaaatacctctgggtcaactccaagagatttgtttgag
gatctagttgaggagttggataaaaagtaccatgaagataaaactcgtgtgaaagatgca
ataaaattaaagaaggtccccgttttgccaacatggacacttgaagatttcaaggctgtc
gtggaggaggacatcatctcatctttatcagatataaatattcaacttgtgtttgaagat
ctagttgagagggccaaggagaaagaggagaaggaagttaaaaagcgtcagcgacttgcc
aaagatttcactgacttattgtatgacaacaaggaaattaatgcatcttcaacctgggag
gagtgcaagcaactctttgaagaaagctccgaatacagagctatcggtgatgagagcctt
gctcgtgagacttttgaggaatatattgctcgtttggtggaaaaggcaaaggagaaagaa
cgaaaacgggaggaggaaaaggctagaaaggaggaaaaagagaagaggaaggagaaagaa
cgaagggagaaagagaaagatagagaagagcgtgacaggagtaaagataaagagcgtttg
aagaaagatgattcagatagtgagaatctggatgttgctgtggagcacaaggaggataaa
agaagagacagaaaacaccggaaacgccatcaagatgatgcgagttctgacaaggatgaa
aaggatgactctaagaagactcgtcgacatggcagtgaccggaaaaaatcaagaaagcat
gcatattcacctgaatctgatattgaaagcaagcataaaaaacacaagaaagagtctcgt
agtaaaaatggtagtcatgaggagcttgaagacggtgaggttggagaggatggagaaatc
cagtag
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