Erigeron canadensis (horseweed): 122607653
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Entry
122607653 CDS
T07610
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03030
DNA replication
ecad03420
Nucleotide excision repair
ecad03430
Mismatch repair
ecad03440
Homologous recombination
ecad03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122607653
03420 Nucleotide excision repair
122607653
03430 Mismatch repair
122607653
03440 Homologous recombination
122607653
03460 Fanconi anemia pathway
122607653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecad03000
]
122607653
03032 DNA replication proteins [BR:
ecad03032
]
122607653
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122607653
Transcription factors [BR:
ecad03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122607653
DNA replication proteins [BR:
ecad03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122607653
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122607653
MMR (mismatch excision repair)
122607653
DSBR (double strand breaks repair)
HR (homologous recombination)
122607653
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
DUF223
tRNA_anti-codon
DUF8448
Rhabdo_glycop_CD
BRC-2_C
OB_POT1A
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
122607653
NCBI-ProteinID:
XP_043636606
LinkDB
All DBs
Position
7:complement(11827543..11831205)
Genome browser
AA seq
601 aa
AA seq
DB search
MAKSVSPNAIETILSNPNPESTANLPEIVVQVLDIKSAGNRYTFSVSDGKKKLKAMLQSS
LSTEVINGNIQNLGLIRIDDYTLNDIPNKNEKYLIVTKCEAVSPALEAEFKVEVKREVPG
ILLKPKQDVVTKSAAQIIHEQNGNSAPSARMAMTRRVHPLASLHPYQGNWTIKVRVTAKG
TMRNYKNMKGEGCVFNVELTDEDGTQIQATMFNEAARKFFDVFQMGKVYYISKGTLKLAN
KQYKTVQNDYEMTLNENSQVEEAMNEAAFIPETKFNFVPIDQLGPYINQKELVDVIGVVQ
SVSPTMSIRRKIDNEAIPKRDIVIADDTKKTVVVSLWNTLATDLGQKLLDMADESPIVAI
KSLRVSDFQGVSLSTLNKSIIEINPDSPDSQKLKSWYSSEGKETSMESVGSGLSPLMKTG
GRSMYSDRVTLEHITSNPSLGEDKPVFYNVRACMSLIRTEQAMSYRACKTCNKKVNEALD
SGYWCEACQKNDASCSLRYILSAKFSDASGGAWFSVFSEDAEKIIGCSADELDKMKSQDD
LSEFQTQLKKATWVPHLLRVMVAPREYNNEKKQRITVKSVAPVDFAAESKFLLDEISSMK
A
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaatcagtgagtccaaatgcgattgaaactatattatcaaaccctaaccctgaa
tcaactgctaatttgcctgaaattgttgttcaagttctcgatatcaagtctgctggtaac
cgatatacgtttagtgtaagtgatggaaaaaagaagttgaaggccatgttacagtcaagt
ttgtcaactgaagttatcaatggaaacattcaaaacttgggtcttattcgtatcgatgac
tacacgcttaacgacatcccaaacaagaacgaaaagtatttaattgtgacaaaatgtgaa
gccgtttcgcccgctttggaagcggaattcaaggtagaggtgaaacgtgaagtaccaggc
attttgttgaagccaaagcaagatgttgttacaaaatcagctgctcaaattattcatgag
cagaatgggaatagtgcaccttctgcacgaatggcaatgactaggagggttcatccatta
gcctccctacacccttaccaaggaaactggactattaaagttcgggtcactgctaaagga
accatgcgtaattacaagaacatgaaaggggaaggttgcgttttcaacgtggagctaacc
gatgaagatggtactcaaatacaagcaacaatgtttaatgaggctgcaaggaagttcttt
gatgtgtttcaaatggggaaagtttattacatatctaaaggcacattgaaattggctaac
aagcaatacaagactgtacagaatgattatgagatgactttgaatgaaaattctcaagtg
gaagaagcgatgaatgaagcggcttttattcccgaaactaagttcaactttgtcccaatt
gatcagttaggaccatacatcaaccaaaaggaacttgttgatgttattggtgtcgtgcaa
agtgtatctccaactatgagcattcgtaggaaaattgataatgaggctattccaaagcgt
gacatagtcattgcagatgacacgaagaagacagtagttgtgtcgctgtggaatactctt
gctactgatcttggtcagaaattgttggatatggctgatgagtcaccaatagttgcaatc
aagtctctaagggtgtcagatttccaaggtgtatctttgtcaactttaaacaaaagtatc
atagaaattaatccagattccccggattctcaaaagttgaaatcatggtattcatctgaa
ggcaaagagacttccatggaatcagttggttctggcttaagtcctttaatgaaaactggt
ggccgatctatgtactctgaccgggtgacccttgaacatataactagcaacccgtctttg
ggtgaagataagccggtattctacaatgtgcgagcttgtatgagtttgattaggactgag
caagctatgtcatatcgagcatgcaaaacatgtaacaagaaagttaatgaagctcttgat
tctggttactggtgtgaagcatgccaaaagaacgatgctagctgcagtttgaggtatata
ttgagtgcaaagttttctgatgcaagtggtggagcttggttttctgtttttagtgaagat
gctgagaaaataattggctgctcggctgatgagcttgataaaatgaagtcacaggatgac
ttgagtgagttccagactcaacttaaaaaggcaacatgggtgccacatcttttgcgagta
atggtcgcaccacgagagtacaataatgagaagaaacaaagaattacagtcaagtctgtt
gctccagttgattttgcagctgaatctaagtttttgctggatgagatatcttcaatgaaa
gcttaa
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