Erigeron canadensis (horseweed): 122607852
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Entry
122607852 CDS
T07610
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122607852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122607852
03036 Chromosome and associated proteins [BR:
ecad03036
]
122607852
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122607852
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122607852
PBAF complex
122607852
GBAF(ncBAF) complex
122607852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
122607852
NCBI-ProteinID:
XP_043636853
LinkDB
All DBs
Position
7:complement(4511554..4514836)
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AA seq
548 aa
AA seq
DB search
MAGGSNNLNNSMKNIGGVSVPTGFGNSGVKGTGNPNQSMGPPNHPQLSEPQAQALAQAQY
VQAQAQAQARAAHARFQAQLQAQAQAQALGQPVPQKPSMMGGLSSNSNIGGSSPSLVTHN
SGKRSGHKPSSRPPGSSSGVAGSPSKTMELTPAARRRKRGPPEKQIPEKVAALLPESALY
TQLLEFEGRVDAALARKKVDIQESIKNPPRVQKTLRIYVFNTFTNQTQTGNPKENTEAPS
WSLKILGRLLDNGSESDETSMLPKPTLTSPKFSSFFKKITIYLDQNLYPDNHVILWESSR
SLALNEGFEVQRKGDKEFTAIIRMEMNYTPEKFKLSSALSEVLGLEIETRPRIIAAIWQY
VKVKKLQISTDTSFFSCDPPLKKVFGDERVKFSMVSQKISQHLTQPQPIHLEHKIKLSGN
NLVGNTCYDVLVDVPFSLDKDMSTFLENLEKHKEIDACDEAICSAIKKIHEHRRRRAFFL
GFSQSPSEFVDAFIASQSKDLKTAAGDATRNAEKEQRAEFYNQPWVEDAVIRYLNRKPAT
VSETPAST
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtggaagtaataatttgaataactctatgaaaaacattgggggtgttagtgtg
ccaactgggtttggtaattctggggttaaaggaactggaaacccgaatcaatctatggga
ccacccaaccatccacagttgtctgagcctcaggctcaggcgctagctcaagcacaatat
gtgcaggctcaggctcaagctcaagctcgagctgctcatgcccggtttcaggcacagcta
caagcacaagcgcaggcgcaagcactagggcagccggtgccacagaagccgagtatgatg
ggagggcttagtagtaatagtaatataggtggttcgtcgccctcacttgttacacataat
agtggtaaaaggtcggggcataaaccgtcttcgcgccctcctggttcttctagtggtgta
gctggttcgccttcgaaaacaatggagcttacacccgcggcacgtagacgaaagagaggc
ccacccgagaagcagattcctgaaaaggtggctgcccttttgccggaatctgctctttac
actcagttgttggagtttgagggtcgtgtggatgctgctcttgctagaaaaaaggttgac
attcaagaatctatcaagaacccacctcgtgtgcagaaaactcttaggatttacgttttc
aacacctttacgaaccaaactcaaactggaaatcctaaggaaaacaccgaagctccttca
tggtctcttaagattctcgggaggttattggataatggatcagaatccgacgagacttcc
atgttacctaaacctactttaacgagtccaaagttttcatcctttttcaagaagatcact
atatacttggatcaaaatctttaccccgataaccatgtgatcttgtgggaaagttctaga
tcgttggcacttaacgagggttttgaagtgcagagaaaaggggataaagagttcactgct
atcattagaatggaaatgaattacacacccgaaaagtttaaactttcgtccgctttaagt
gaagttcttggactcgagatcgagacccgtcctcgaattatcgctgcaatttggcaatat
gtgaaagttaaaaagttacagatctcgacagatacttcatttttctcgtgtgatccgcct
ctaaagaaagtatttggagatgaaagggtgaaattttcaatggtgtctcaaaagatttca
cagcatttgactcagccgcagcctatacatttggagcataaaatcaagctttcgggtaat
aatctggtgggaaacacttgttatgatgttcttgtggatgttcctttttcattagataaa
gatatgtctacttttttggaaaatttggagaagcataaggagattgatgcatgtgatgag
gcaatttgctctgcaattaaaaagatccatgaacataggcgtagacgggctttctttctg
gggtttagtcagtcacctagtgaatttgttgatgcctttattgcgtcacagagcaaggat
ttgaagacggcagctggtgatgctactcgtaatgctgagaaagagcagcgggccgagttc
tataaccaaccatgggtcgaagatgcagttattcgttacttgaacaggaaacctgccaca
gtaagcgagacacctgcaagcacgtag
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