Erigeron canadensis (horseweed): 122607935
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Entry
122607935 CDS
T07610
Name
(RefSeq) protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122607935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122607935
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122607935
mRNA degradation factors
5'-3' decay
Decapping complex
122607935
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
122607935
NCBI-ProteinID:
XP_043636951
LinkDB
All DBs
Position
1:36755325..36759740
Genome browser
AA seq
762 aa
AA seq
DB search
MERSGSFPDDKVFDASQYAFFGQKSMEKADFGCLEENDDTTLTGMADDEYHLFDREEEPG
MGSLLELDDLTTIFSKINRSVSGPRHPGVIGDRGSGSISRESSSASDWVQDRDLPEWLDQ
HISDTESSQGSRRWSSQSHLPDPKPLYRASSYPHEKHQFFSEPLLVPSSSLPSFSPGGHN
NLPSPRQHSHLSRSSGLGSPQMPFSEPNLSPLGSVPNVSRYGGNRSQLLHPGLSQNQYAQ
AQNQWANHTLHVDHAGLLTNSYQQKLLQNGFLSPHLMSPHSLRQHSLSPFALQPYLYDSL
PSHALHLNKYGLADTRDQRPKQKGKHSARISRQGSDSSNQKTDKCRVQFRSKYMSAEEIE
GILNMQHAATHSNDPYINDYYHQARLAKSSSKHRFSPAHLRDSSNRSRNSSDSQPHINVD
SHGRISFSLIRRPQPLLDVDPPSGSGDGGSEKRSEKPLEQEPMLAARIMIEDGLCVLLDV
DDIDRLLQSTQPQDGGSQARQRRQILLEGLAAALQLVDPLGVSSSGLAPKDDIVFLRVVS
LPKGRKLMSRYLQLLSPSSELARIVCMTIFRHLRFLFGGLPSEHEASETVTSLAKIVKTC
ISAMDLNSLSACLAAVVCSPEQPPLRPLGSPAGDGASIILKSVLERATQLLSGANSGLQN
PTLWQASFDAFFGLLTKYCLSKYDSLVQAMYAQVSPSTEIVLSEAAKTISREMPVELLRA
SLPHTNDNQRKMLVDFSHRSIHVGEFSGHRGSGQAAPESVRG
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctggttctttccctgatgataaagtgtttgacgcttcacaatatgctttt
tttgggcaaaaaagtatggaaaaagctgattttggttgtttagaggaaaatgatgatact
actttgactggaatggctgatgatgagtaccatttgtttgaccgagaagaggaacctggt
atgggatccctattggaattagatgatctgacaacaatattttcaaagataaacagatca
gttagcggacctagacatcctggtgttattggtgatcgagggtcaggatctatttcgagg
gaaagttcatctgcatctgattgggtacaagatagagatttacctgagtggttagatcaa
catatttctgacactgaaagcagccagggaagcaggagatggtcttcacagtctcatctc
ccagatcctaaaccgttgtaccgtgcatcatcataccctcatgagaaacaccaattcttc
tccgaacctttactggtaccgagctcgtcattaccttctttttctcctggtggccataat
aaccttccgtcgcctcgccaacattcacatctaagccgttcatctggcttgggtagtcct
cagatgccgttttccgaaccaaatctctcacctttaggttctgttcccaatgtctctcgc
tatggtgggaaccgaagtcaactgcttcatccaggattaagccaaaaccagtatgctcag
gcccaaaaccaatgggctaaccacaccttacatgtggatcatgctggactattaacaaac
agttatcaacaaaagttgcttcaaaatgggttcttatcaccgcatctaatgtcaccacat
tctctacgtcagcattcgttgagcccgtttgcactccagccttacctatatgattcactt
ccttcacatgcattacatttaaataaatatgggttagctgatacaagagatcagagaccg
aaacaaaagggtaaacacagtgcacgtatatcccgtcagggctcggatagtagcaatcag
aagactgacaaatgtcgggtacaattcagatccaagtacatgtcagcggaagagattgag
ggtattcttaatatgcagcatgctgcaacacatagcaatgatccttatataaacgattat
tatcaccaagctcgtcttgccaagagttcatccaaacaccgtttcagcccagctcacctc
agggattcttcaaaccgatcccgtaatagttcagattcccaacctcatatcaatgtcgat
tctcatggaaggatttcattttctctcattcgtaggcctcaaccgcttcttgacgttgac
ccaccatctggttcgggtgatggcggttctgaaaaaagatccgagaaaccactggaacaa
gaaccgatgcttgctgccagaatcatgattgaagacggcctatgtgtacttcttgatgta
gatgacattgatcgtcttctgcaatcaactcagcctcaagatgggggttctcaggcgagg
caaaggcgccaaattcttctagaaggcctagcggcggcacttcagcttgtggacccacta
ggggtaagttctagcgggttggcacctaaagacgatattgtgttcttacgggttgtatct
ctccccaagggtcgaaagttgatgtccagatatcttcaacttctctcaccaagtagtgaa
cttgcacgaatcgtatgcatgaccatttttcgtcacttacggtttttatttggtggtctt
ccttctgaacatgaagcatctgagacggttacatcactagcaaagatagtgaaaacatgt
atcagtgcaatggatcttaattctcttagtgcttgtcttgctgctgtagtttgttctcca
gaacaaccgcccctacgcccgcttggtagtccagccggcgatggtgcttccattattctt
aagtcagttctagaaagagctactcagctcttaagcggtgctaactcgggtttgcaaaat
ccaacactctggcaggcttcatttgatgcatttttcgggcttttgacaaagtattgtttg
agtaagtatgatagtttggtgcaagctatgtatgcgcaggtttcaccaagcacggagatt
gtattatctgaagctgcaaagaccattagtagagaaatgccggtggagcttcttcgtgct
agtctgcctcatacaaatgataatcagaggaagatgttggtcgacttttctcacaggtca
atacatgttggtgaattcagcggtcatagaggcagtggccaggctgctcctgaatctgta
agagggtaa
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