Erigeron canadensis (horseweed): 122607978
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Entry
122607978 CDS
T07610
Name
(RefSeq) putative cyclic nucleotide-gated ion channel 8
KO
K05391
cyclic nucleotide gated channel, plant
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
122607978
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecad04040
]
122607978
Ion channels [BR:
ecad04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
122607978
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
PBP1_TM
IQ
Motif
Other DBs
NCBI-GeneID:
122607978
NCBI-ProteinID:
XP_043636994
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Position
7:complement(3456422..3460046)
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AA seq
708 aa
AA seq
DB search
MKRFGFNVEGANNTGPPRPTASKSIKLGMRRGGEGLINFGQSLKTGVTRAVFSEDLKVSE
KKIIDPQDKNLLIWNKFLVLSCILAVYVDPLFFYIPVYNNKENCLKIHRSLAHSITTVRT
IVDIIYIIRIGLQFRTAYIAPSSRVFGRGELVIDPAQIARRYVQRYFLVDLLSVLPLPQV
VVWRFLHKSNGSGVMGTKKILLWIVIVQYIPRSFRILPLFSELKKTVGVITETAWAGAAY
YLVWFVLAGHIFGAFWYLLAVERKSSCWEQACIKENKCEVEYLYCGHQKTDGYKAWAQIS
KATLDEHCVESEAYGEFDYGIYLQAVQSQVDSSEQFISKYCYCLWWGLRNLSTLGQGLET
STYAKEIIFSIIIAISGLILFALLIGNMQTYLQSLSVRLEEMRIKRRDSEQWMHHRLLPQ
ELKERVRRYDQYKWVETRGVDEESLVQSLPKDLRRDIKRHLCLNLVKRVPLFANMDERLL
DAICERLKPSLYTENTYVLREEDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFC
GEELLTWALDPKSAANLPPSTRTVKALTEVEAFALIADEVKFITSQFRRLHSRQVQHTFR
FYSQQWRTWAASFIQAAWRRYSRRKLIELHRLEEEEDDEDYQDYSADEDDDDVNEESALI
KGRASSFGATMYASRFAANAMRRVQRRRGMSTGFISLQKPSEPDFTVE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaagagatttgggttcaatgtagaaggagcgaacaatactggtcctccacgtcctact
gcatccaagtcgataaagttaggaatgagaagaggtggggaaggactaataaactttggg
caaagtttaaaaactggagtgacgcgtgcagtgttctcggaagatctcaaagtgtccgag
aaaaaaataatcgatcctcaagacaagaatcttctgatatggaacaagtttttggtctta
tcttgcattcttgcagtatatgtggatcctttatttttttacatcccagtttataataac
aaagagaattgcttaaaaatacatagaagtttagcacactctatcacaactgtgaggacc
atagttgatataatctacattatccgcattggtctccagtttcgtacagcatatattgca
ccatcgtctcgtgtgtttgggcgtggtgaacttgtaatagatcctgcacaaatagcaagg
cgatatgtgcaacgttattttttagttgaccttctatctgtgctaccgttaccacaggtt
gtagtttggagatttcttcataaatcaaatggttcgggtgtgatgggtacgaaaaagatt
ttactgtggattgtaattgtgcagtacattcctaggtccttccgtatcctgccattgttt
tcagagctcaaaaagactgtgggtgtcattactgaaacagcttgggctggtgcagcatat
tatttggtttggtttgttcttgctggacatattttcggggcattctggtatctattagct
gtagagcgtaaaagttcatgttgggagcaagcttgtatcaaggaaaataagtgtgaagta
gaatatctttactgcggacatcagaagacagacgggtataaagcctgggctcaaataagt
aaagccactcttgatgaacattgtgttgaatctgaggcctatggagaatttgattacggg
atctacttacaagccgtgcagtctcaagttgattcatctgaacaatttatatctaaatac
tgctactgtttatggtggggcttaagaaacttgagtacactcggccagggactagaaacc
agcacctatgctaaagaaatcattttctcaatcataatcgcaatttctgggctcattctc
tttgctcttctcatcggcaacatgcagacctatctccaatcactttcggttcgcctagag
gagatgaggatcaaaaggagagactccgaacaatggatgcatcataggttacttcctcag
gagcttaaagaaagagtacggcgttatgatcagtacaaatgggtggaaacaagaggcgtg
gatgaagagagcttggtccagagtctacctaaagatctaaggagggatatcaagagacac
ctttgtttgaatttagtcaaaagggtgccactgtttgcaaatatggatgaacgattactt
gatgccatatgtgagcgcctaaaaccaagtctctacacagaaaacacgtacgtactaaga
gaagaagaccctgttgatgaaatgttgttcattatccgtggcagattagaaagtgtcact
acggatggtggcagaagtgggttcttcaaccgtggtttcttaaaagaaggcgatttttgt
ggtgaagagcttctaacctgggctttggatccaaaatcagcagctaatctgccaccatct
actcgaacagtaaaagcattaacagaagtagaagcattcgcattaattgcagatgaagtg
aagttcatcacaagtcagttcaggcgtcttcacagtcgacaagttcaacacacattcaga
ttttattcacagcaatggagaacatgggctgcaagctttatacaagccgcatggagaagg
tattccaggaggaagctcatagaacttcatcggctggaggaagaagaagacgatgaggat
tatcaggattattctgcagatgaggatgatgatgatgtaaatgaagaaagtgcgttgatt
aaagggcgtgcctcatcgtttggtgcaacaatgtacgcatcaaggtttgctgctaatgct
atgagacgagttcagaggagacgtggtatgtccacagggtttattagtcttcaaaagccc
tctgagccggattttacagtggaatga
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