Erigeron canadensis (horseweed): 122608053
Help
Entry
122608053 CDS
T07610
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03022
Basal transcription factors
ecad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122608053
09124 Replication and repair
03420 Nucleotide excision repair
122608053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122608053
03036 Chromosome and associated proteins [BR:
ecad03036
]
122608053
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122608053
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122608053
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122608053
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
122608053
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122608053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
NAMPT_N
AAA_11
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
122608053
NCBI-ProteinID:
XP_043637071
LinkDB
All DBs
Position
7:35103256..35109434
Genome browser
AA seq
761 aa
AA seq
DB search
MIFQIDDVTVYFPYDNIYPEQYSYMIELKRSLDAKGHSLLEMPTGTGKTIALLSLITSYS
LSKTDSSPLKLLYCTRTVHEMEKTLAELKLLVRYQIECLGPSAKILALGLSSRKNLCVND
EVVKGGENRDSVDAGCRKLTASWVRALAVEDPNVKTCDWFERYDKAGSDAVLAPGVYTLQ
DLRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQRESVVVFDEAHN
IDNVCIEALSVSIRRQTIEGATRNINKMSKDIERFKEKDNGRLRAEYNRLVEGLAQRGNL
PIGDTWLANPALPDDILKEAVPGNIRRAEHFLSVLRRLVQYLSGRLETDNVEKEGPVTFV
NSVNSHVGIDQKMLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLVGTYSRGFSIII
EPYDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFNPVVS
RSFTMSLTRDCICPMVLTRGSDQLPVSTKFDLRSDPGVERNYGRLLLEMVSVVPDGIVCF
FVSYSYMDAIVNSWNETGILKEIMQRKLVFIETQDVVETTLALDNYRKACDCGRGAVFFS
VARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIREGDFLTFDALR
QAAQCVGRVIRSKADYGMMIFADKRYTRHDKRSKLPGWILSHLRDANLNLSTDMAVHIAR
EFLRKMAQPYDKAGGGGKKTLLSQKDLEEMMMSGTGDGKMF
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgatattccaaatcgatgacgtaacagtctactttccatatgacaacatctatccagaa
caatattcctacatgatcgagctcaaacgatctctagacgcaaaaggccattcgttactc
gaaatgccgaccggaaccggtaaaacgatcgcattattatctctaattactagttattcg
ttatcgaaaaccgatagttcaccacttaagttactatactgcactagaactgtacatgag
atggaaaaaacattagctgaattgaaactattagttaggtatcagatagagtgtttaggg
ccgtctgcgaagattctcgcgttaggattatcatctaggaagaatttgtgtgtgaatgat
gaggttgtgaaaggtggggagaatagggattcggttgatgccgggtgtaggaagttgacg
gcgagttgggttagagcgttggcggttgaggatccgaatgttaagacgtgtgattggttt
gaaaggtatgataaggctggttcggatgctgttttggctcctggtgtttatactttgcag
gatctaagggtgtttggaaaggagaaagggtggtgcccatactttctagcacgtcatatg
gtgcaatttgcaaatgtggtggtttatagctaccagtacttacttgatcctaaagtagct
gggatcatatcgaaggaaatgcagagagagtctgtagtggtgtttgatgaggctcacaat
attgataatgtgtgcattgaggcactgagtgttagtatacggaggcaaacaattgagggg
gctactagaaatattaataaaatgtctaaggatattgaaaggtttaaggaaaaggataat
ggtaggttacgtgccgagtacaaccgacttgtcgagggtctagcgcaaagagggaacctg
ccaattggtgatacatggcttgcaaatcctgctttacctgatgacattttgaaggaggca
gtgccaggaaatatacggcgagcagagcatttcttgtctgttttacgcagattggtgcag
tacttgagtgggcgtttggaaactgataatgttgaaaaggaggggcctgttacatttgta
aactccgtgaattcacatgttggaattgaccaaaaaatgttgaagttttgctatgatcgt
ctgcactcgctaatgctgactctggaaattactgataccgatgaatttttgcacattcaa
acaatttgcgactttgcaacactagtggggacatacagcagagggttctcgatcataatt
gaaccctacgatgagagaatgccccatattcctgatccagtgttgcagcttagctgccat
gatgcttctcttgcaataaagcccgtttttgatagatttcaatcggttgttatcacatcc
ggaacactgagcccaatcgatctctaccctcgacttcttaatttcaatccagtggttagt
cggagttttaccatgtccttaactagggactgtatatgccccatggttcttacacgggga
agtgatcaacttccagttagcacaaagtttgatttgagaagtgatcctggagtggaaaga
aattacggaaggcttttgttggagatggtgtcggtagttcctgatggaattgtttgtttc
tttgtcagttactcatatatggatgccatagtgaacagttggaatgaaactgggatcttg
aaggaaataatgcaacgcaaactggtgttcattgagacacaagatgttgttgaaactaca
ttggcacttgacaactatcgtaaggcttgtgattgtgggagaggtgccgtgtttttctcg
gttgccaggggaaaagttgcagaaggtatagactttgatcgacattatgggaggcttgta
atcatgttcggtgtccctttccagtacacattaagcaggatattacttgctcggctggag
tacttgcgagaaacttttcagataagagaaggcgactttttgacttttgatgcattgaga
caagctgctcaatgtgtgggacgagttattcgttcaaaggcagattatggaatgatgata
tttgctgacaagagatatactagacatgacaaacgctctaaattacctggatggatcctg
tcccatctgcgtgatgcaaacctgaacctgagtacagatatggcagtgcatatagcaaga
gagtttctgagaaagatggcacaaccatatgataaagcgggtggcggtggaaagaaaaca
cttctttctcagaaagatttggaggagatgatgatgagtggtactggtgatggaaagatg
ttttaa
DBGET
integrated database retrieval system
