Erigeron canadensis (horseweed): 122608111
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Entry
122608111 CDS
T07610
Name
(RefSeq) nuclear pore complex protein NUP96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122608111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122608111
03036 Chromosome and associated proteins [BR:
ecad03036
]
122608111
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122608111
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
122608111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
TusA
Motif
Other DBs
NCBI-GeneID:
122608111
NCBI-ProteinID:
XP_043637136
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All DBs
Position
7:3121278..3129499
Genome browser
AA seq
1007 aa
AA seq
DB search
MGVDLDVQDPFHESLVRSQFKKRKVSLDGDHASSACLVSHEINSFFPTLRAFDYFMEPSL
SELAIRELMDPGHCSRVQNFTVGRYGYGCVKFSGETDVRWLDLDQIIKFRRHEIVVYEDE
TAKPVVGKGLNKAAEVTLLLQISSSIEKLMASAEKQGAEFLSFDPSRKEWKFFVQHFSRF
GLSDDEEDDVMMDDADVNLEVRERVIMNDSDGPDLDEDTPSMDSRLLSHSLPSHLGLDPV
RMKEMRMIMFPDEEEEDEESNGMFSNHRPPFGKEPISKPVQRSSPQAIRKTPLALLEYNP
ASFCSSPNGSILLAQQNKGLPLMIAKVQGFKLEVKETPVTRSYSRNIVDAGLFMGRSFGV
TWGPNNLLLHCGSTVSSTDQKRELSSTITIEKVAMDNVVRDENNKIREELNDLCFDSLLN
FHKEISHETKEVAVGSYKIKTREVACNRLELLHVCRSYIGIIEKQLEVPGLSPSARVLLM
HQVFVWELIKVLFSSKESSLEVDVDALPLIRRAEFSDWLQESVCHRVQDEISSLNDSNDL
QHLLLLLTGRQLDAAVELSASRGDVRLACLLSQAGGSTVNRTDIDRQLRLWKTNGLDFNF
MEQDRIRLLELLAGNIDDALGDMIIDWKRFLGLLMWYKLPPDSDLTFIFRTYQHLLEDGR
APFPVPVYIDEGWVEDGISRIRGNRFDLSYYLMLLHGSEQIESSILKTMFSAFASTHDAL
DHHMIWHQRAVLEAIGTFSSDDLHVLDMGFVSQLLSLGHCHWAIYVVLHMPHRDDYPYLQ
ANVIREILFQYCETWSAQDTQRQFIVDLGIPSAWLHEALAVYHAYFGNCFKALEHYLGCA
FWQKAHSTFVTSVALSLFLSGKDSEIWRLATSMEDHKSEIENWDLGAGIYLSFYLLRSAL
KGEDDTMTKLVSLEDKNEDCKKFFGCLKGSLAIWGNRLPIDARMVYANMAEEISDLLVAD
SGEGSTTEIKLECFNTIFEAPIPEDLLSCHLQSAVSHFTLYLTQAAS
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcgatctggatgtccaggacccttttcacgagtctcttgttagatctcagttc
aaaaaaaggaaagtaagtttggatggtgaccatgcttcttcagcatgtttggtttcccat
gagatcaattctttttttcctactctgcgagcctttgattatttcatggaacctagtttg
agtgaattagccataagggaactcatggatccaggtcattgcagtagggttcaaaacttc
acagttggtagatatggttacggatgtgttaagttttctggagaaactgatgtcagatgg
ttagatttagaccagattatcaagttcaggaggcatgagattgttgtgtatgaagacgaa
acagccaaaccagtggttggtaagggacttaacaaggctgcagaagtaactctattgcta
caaataagctcttcgatagaaaagttgatggcgagtgctgaaaagcaaggagcagagttt
ctttcttttgaccctagtcgaaaagaatggaagttctttgtccaacattttagcagattt
ggtttaagcgacgatgaggaggacgatgttatgatggatgatgctgatgtcaatttagaa
gttcgtgagcgggttattatgaatgatagtgatggtcctgatcttgatgaagacaccccg
tcaatggattctcgtctactttcccattctcttccttcacacctcggtcttgatccagtt
agaatgaaggaaatgagaatgattatgtttcctgatgaggaagaagaggatgaggaatca
aatggaatgttttcaaaccacaggcctccgtttggtaaggaacccataagcaaaccagtg
caaagatccagtccacaggcaattcgtaaaactccactagctttgctcgagtacaatcct
gccagtttttgctctagtcctaatgggtctatattattggctcaacaaaacaaaggacta
cctttgatgatagcaaaagttcaggggtttaagctggaagttaaggaaacaccggtaaca
cgtagctattctcggaatatagttgatgctggattattcatgggtaggtcctttggtgta
acctggggtccaaataaccttcttcttcactgtggttctactgttagcagcactgatcag
aagcgggaattgtcttctacaataactatagaaaaagttgcaatggataatgtggtcaga
gatgaaaacaacaaaatacgggaagaacttaatgatttgtgttttgattctctactaaat
ttccataaggaaattagtcatgaaacaaaagaggttgcagttggttcatataagataaag
actcgggaggttgcctgcaaccgtttggaacttttacatgtatgtagaagctacatagga
attattgagaagcaactggaggttcccggattatctccttcagctcgtgtgctgttaatg
caccaagtatttgtctgggaattgataaaggttctattttcctcgaaggaaagttcatta
gaagttgatgtggacgcactcccattgatccgaagagcagagtttagtgactggttacaa
gaaagtgtgtgtcaccgtgtacaggacgaaataagttctttaaatgattcaaatgattta
caacatttacttttgcttctaactggacgacaactcgatgcagctgtagaactgtctgct
tctagaggagatgtaagacttgcttgtctgctgagtcaggctggcgggtccactgtcaat
cgtactgatattgatcggcaacttcgtctttggaaaaccaacggtttagatttcaatttt
atggagcaggacagaatcagacttctcgagttacttgctggtaatatcgatgatgccttg
ggtgacatgataattgactggaagcggtttttgggattgttgatgtggtataaacttcca
ccagattcagatctaaccttcattttccggacgtatcagcatcttctagaagatggacgg
gctccctttcctgtccctgtatacatagacgaaggatgggtagaagatggtataagtcgg
atccgtggtaaccgttttgatctttcatattatcttatgcttcttcatggtagtgaacag
attgaatctagcatcttgaagactatgttcagtgcgtttgcttcaactcatgatgccctt
gatcatcacatgatttggcatcaacgtgcagttttagaagcaattggcacatttagttct
gatgatcttcatgttcttgacatgggatttgtttcccagctgttatctctagggcactgt
cactgggccatctatgttgtgctccacatgccccatcgtgatgattatccgtacctgcaa
gctaatgttatcagggaaatattgttccagtattgtgaaacctggagtgctcaagatacc
caacgtcaattcattgtggatttgggaattccatcagcttggttgcatgaggccttggca
gtatatcatgcttactttggaaattgtttcaaggcccttgaacactatctcggatgtgct
ttttggcaaaaagcacattcaacctttgtaacttcagttgcactttctttgtttttgtca
ggcaaagattcagagatatggaggcttgcaacatctatggaagaccataaatcagaaatt
gagaattgggacttgggcgctgggatatatttatcattttatttacttagaagtgcattg
aagggagaggatgatacaatgaccaaactggtttctcttgaggacaaaaatgaagactgc
aagaaattttttggttgcttgaaaggttctttggcaatttggggtaaccgcttgcctatt
gatgccagaatggtgtatgcaaatatggcagaggagatcagtgatttgctagttgccgat
tctggggagggttcgaccactgagattaagttagaatgcttcaatactatattcgaggcc
cccatacctgaagaccttctttcatgtcatttacagtctgccgtatctcattttacattg
tatcttactcaagcagcgtcataa
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