Erigeron canadensis (horseweed): 122608140
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Entry
122608140 CDS
T07610
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03020
RNA polymerase
ecad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122608140
09124 Replication and repair
03420 Nucleotide excision repair
122608140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122608140
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122608140
Enzymes [BR:
ecad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122608140
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122608140
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122608140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MIF4G_like_2
TACC_C
Motif
Other DBs
NCBI-GeneID:
122608140
NCBI-ProteinID:
XP_043637164
LinkDB
All DBs
Position
7:2145739..2156254
Genome browser
AA seq
1832 aa
AA seq
DB search
MDIRFPYSPAEVSKVRLVQFGILSPDEIRQMSVVHIEHGETTERGKPKVAGLSDPRLGTI
DRKLKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK
FKQAQKIRNPKNRLKKILDACKSKAKCDGGDDIDSQSQDTEEPVKKRRGGCGAQQPKISI
DGMKMVAEYKLQKKKSDDTEQLPEPAERKQQLSAERVLSVLKRVSDEDCMLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYLKKSSDHHLEFGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDS
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPTPTILKPRPLWTGKQVFNLIIPKQIN
LIRTAAWHSETETGHLTPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQQGFSIGIGDTIADASTMETINETISKAKNEVKELIRAAQDKQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKIKKREFDRLFKYEIDDDNWNPSYMLPDHVEDLKTIREFRNVFDAEVQKLEADRVQ
LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLRVVP
GDDLLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVYLK
PEVSKTKDRAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP
EVEWMLDTEGVNLLAVMTHEDVDALRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF
LRGVTENIMLGQLAPIGTGDCGLLLNEAMLQQAIDVQLPSYIDGLDIGMTPGRSPITPFH
DGSMSPTSYLFSPNLRLSPISNNAQFSPYVGGIGFSPASSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPTYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSSAKYSPSLAYSP
SSPRPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGVAPEYSPSSPQYSP
SAGYSPSAPGYSPSSTSQYTPSMSNKDDGSRP
NT seq
5499 nt
NT seq
+upstream
nt +downstream
nt
atggatatacggttcccgtattctccggctgaagtttcaaaagtccggcttgttcaattc
ggaatccttagtccagatgaaattaggcaaatgtcagtggtgcatatagaacacggggaa
accacggaaagagggaaaccgaaagtagccggattgagtgatccgcggcttggtaccatt
gacaggaagcttaaatgtgaaacttgtatggctaatatggccgaatgcccgggtcatttt
ggtcatcttgagctcgccaagcccatgtttcatatcggtttcatgaagaccgttctcagt
attatgcgttgcgtttgcttcaattgctccaagatcctcgccgacgaggatgatcacaaa
ttcaagcaagcccagaaaataagaaatccgaagaataggcttaagaaaatcttagatgca
tgcaagagcaaagctaaatgtgatgggggtgatgatattgattctcaaagccaggatact
gaggagccggttaaaaagagacgagggggttgtggggcccagcagccaaagattagtatt
gatggcatgaaaatggttgcagaatacaagcttcagaagaagaaaagtgatgacacagaa
cagctcccagagccagctgaaagaaagcagcagctttctgcagaaagagttctgagtgta
ttaaaaagagtgagtgacgaggactgtatgttgttgggcttgaaccccaagtatgcacgt
ccagattggatgatcctgcaggtccttccaataccacctcctccagtcagaccatctgtc
atgatggatacctcagctcggagcgaggatgacttaactcatcagctggccatgataatt
agacacaacgagaatctgaggaaacaagaaaggaatggtgctcctgctcacattatatct
gaatttgctcagttactgcagtttcatgttgctacatattttgacaatgagcttccgggt
cagccaagggctacacaacgatcaggccgtcctatcaaatccatatgcagtaggcttaag
gcaaaggagggccggatcagaggtaacctgatggggaagcgtgttgatttttcagcacgt
acagtcatcactccagatccaaccatcaatattgatcaactgggggtgccatggagtatt
gctttgaatcttacttatcctgaaacagtcactccttataacatagaaaggctgaaggag
cttgttgagtatggtccgcatcccccccctggtaaaacgggagccaagtatattatccgg
gaagatggtcaaaggcttgatcttcgttatttgaagaaaagcagtgatcaccatctggag
tttggttacaaggttgagcgacacttgaatgatggagattttgtgctttttaatcggcag
ccaagtctacataagatgtccattatggggcataggattaaaatcatgccatattccacc
ttccggttaaacctatcggtcacatcaccatataatgctgattttgatggcgatgaaatg
aacatgcacgtacctcaatcatttgaaacaagagcagaagtcctggagttgatgatggta
cctaaatgtattgtctcacctcaagcaaatcggcctgtcatgggtattgtgcaggattca
cttttaggttgccgtaaaatcaccaagagagataccttcattgaaaaggatgttttcatg
aacatattgatgtggtgggaggattttgatggaaaagtaccaacgcctacaattttgaaa
cctagacctctatggacaggaaaacaagttttcaatctcatcatcccaaagcagataaat
cttatcaggacagctgcttggcattcagaaactgaaactggacatctaacgcccggtgac
actcaagttcgaattgagaagggagaggttatcaccggtactctttgcaagaaaaccctc
ggtgcatctactggaagtcttatacatgtcatctgggaggaggttggtccagatgctgct
cgtaagtttcttggacatacccagtggcttgttaactactggcttttgcaacaagggttc
agcattgggattggagacacgattgctgatgcatccactatggaaactattaatgaaact
atttcgaaagccaagaatgaggtgaaagaacttattagggccgcacaagataaacagttg
gaggcagagcctggtcggacaatgatggagtcatttgaaaacagagtgaatcaggtgctg
aacaaggctcgtgatgatgctggaagtagcgcccagagaagtttatcagagagcaacaat
cttaaggctatggtcacggcaggttcaaaaggaagtttcatcaatatatcacaaatgact
gcttgtgtgggacaacagaacgttgagggtaagcgaataccttatggcttcatagatcgg
actcttcctcatttcacaaaagatgattatggacccgaaagtcgtgggtttgtggagaat
tcttatctacgagggctgacaccacaagaattctttttccatgccatgggaggtagagaa
ggtctcattgatactgcagtaaaaacatctgaaactggctatattcaaaggcggttggta
aaagctatggaagatattatggtgaagtatgatggtacggtgaggaattctttgggagat
gttatccagtttctctatggggaagatggcatggatgcagtttggattgaaagtcagaaa
ctcgattcgttaaaaattaaaaaaagggagtttgaccggctttttaaatacgagatcgat
gatgataattggaatccgagttacatgcttccagatcatgtcgaggatttaaaaactatt
cgggaattccgtaatgtgtttgatgctgaagtacaaaaactcgaagctgatcgagtccaa
cttggaactgagattgctaccacgggtgataattcatggccgatgcctgttaacctcaaa
cgacttatatggaatgcacagaagacctttaaggttgacttgagacgtccctcggatatg
catccaatggaaatcgtggaagcagttgataagcttcaagaacggttgcgtgttgttccc
ggtgatgatttgttgagtatcgaagctcaaaagaatgcaactctgttctttaacatcctc
cttcgtagcacttttgctagcaagcgggtgttgagtgagtacagacttacacgtgaagcg
tttgagtgggttatcggtgagatagagtcaaggtttttacagtcgctcgttgcaccggga
gaaatgattggatgtgtagcagcacagtcgattggtgagccagccacgcagatgactcta
aacactttccattatgctggtgtgagtgccaaaaatgtgactcttggtgtaccccgattg
agagagattattaatgttgctaaaaatatcaaaaccccttcattgtctgtgtatttgaag
cctgaggtcagcaagacaaaagatcgggccaagaatgttcagtgtgcgttagaatacacg
acacttcgcagtgtgactcaagctactgaagtatggtatgacccggatcccatgagtaca
atcatcgaagaggatgtggactttgtcaaatcatactatgaaatgcctgatgaagaaatt
gatcctgataaaatatctccatggttactccgtatcgagttaaatcgggaaatgatggtt
gataaaaagttgagcatggcggatattgcagagaagattaatctcgagttcgatgatgat
ttaacatgtatattcaatgatgacaatgccgagaagttgattctacgaatacgtatcatg
aatgatgaggccccgaaaggcgaattgcaagatgaatcagctgaagatgatgtgttcctg
aagaaaattgagagtaatatgctaacagaaatggccctacgtggcattcctgatattaac
aaggtgttcataaaatcgggaaaagtcaacaagttcgatgagaatgaaggatttaagcct
gaagttgaatggatgcttgatactgaaggtgtgaaccttttggctgtaatgactcatgag
gatgttgatgccttgagaacgaccagtaatcatttgattgaagtaattgaggtgttgggg
atcgaagcggttaggaggtccttactggatgagctccgtgtggtcatctcttttgatggt
tcttatgttaactatcggcatttggctatactatgtgatactatgacatatcgtggtcat
cttatggccataacacgtcacgggatcaataggaatgataccgggccaatgatgagatgc
tccttcgaagaaacggttgatattcttcttgatgcggctgtatacgcagaaacagatttc
ctgaggggagtgaccgaaaacataatgctgggacaacttgctcccatagggacgggggac
tgtggtttgttgctaaatgaggcaatgctacaacaggctatagatgttcagctacctagc
tatatcgatggtcttgacattgggatgacacctggcagatcacccattactcctttccat
gatggttcaatgtcgcctaccagttaccttttcagcccaaatctacgattatcaccaatc
agcaacaatgcacaattttccccttatgttggtgggataggcttttctcccgcatcttca
cctgggtacagtccatcgtctccaggttatagcccgtcatctcctggctatagcccgact
tcacctggctatagcccaacctcacctggttatagccctacgtcgcctggctatagccct
acatcaccgacgtacagtccaagctcgccgggttacagtccaaccagtcctacctactcg
cccacatcaccaagctactcacccacctcacctagctactcacccacctctcccagctac
tccccaacctcacccagttattctcctacttcgcctagttacagcccaacatctcctgcc
tacagcccaacatcaccggcatacagcccaacatcaccagcatacagcccaacctcgcca
tcttatagcccaacctcgccatcctacagccccacctccccgtcttatagcccaacgtct
ccatcttacagcccaacctcgccatcctatagcccgacgtcgcctgcctatagccctaca
tcccctgggtatagcccgacttcaccgagctatagtcccacctcacctagctacagtccg
acttcaccaagctataatccatcatcggccaagtacagcccatctctggcttattcccct
agcagtccaaggccttctagcccgtatagccctacatcacccaattatagccccacctca
ccatcgtattctcctacctctccttcctactctccctcaagccctacatacagtcccagc
agtccttactcatctggcgtggctcctgagtacagccctagctcaccgcagtatagtcca
agtgctgggtactcgcctagtgcgcctgggtattcgccttcatcaaccagccagtatact
ccttcaatgagcaacaaggatgatggttcgaggccttaa
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integrated database retrieval system
