Erigeron canadensis (horseweed): 122608170
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Entry
122608170 CDS
T07610
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31 homolog
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122608170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122608170
Spliceosome [BR:
ecad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122608170
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Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
122608170
NCBI-ProteinID:
XP_043637199
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Position
1:complement(944899..949403)
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AA seq
485 aa
AA seq
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MANLEDSFLADLEDLSDNDNENLDEDNGDAEHMEEDVHGDLADLEAINYDDLDSVSKLQK
SLRYIDIMKKVEGALEKGSDMSNQAMVLQDDPEYQLIVECNTLSVDIENEIEIINKFIRD
KYRLKFPELGSLVHHPIDYARVVKKIGNEVDLTLVDLEGLLPSAVIMVVSVTASTTSGKP
LPEDVLQKTIEACDRALTLDASKKKVLDFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGL
SSLAKMPACNVQILGAKKKNLAGFSTASSQFRVGYIEQTEVLQTTPPSLKMRACRLLAAK
STLAARVDSIGGDPSGTQGRTYREEIRKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRR
LRKMKERYAITDMRKLANRMQFGIPEESSLGDGLGEGYGMLGQAGNGKLRVSVGQSKLAA
KAAKKYKGKQYSSGGATSGLTSSLAFTPVQGIDLIDPQADANRLGSGMQSTYFSETGTFS
KIRRI
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatcttgaagattcttttctcgcagatctcgaggatctttcggacaatgataac
gagaatctggatgaagacaatggggatgcagaacacatggaagaggatgttcatggagat
ttagccgatttagaagcaatcaattacgatgatcttgatagcgtttccaagttgcagaaa
tcactgagatatatcgatattatgaagaaagttgagggtgctctcgagaaagggtcagac
atgtcaaatcaagctatggttttgcaagatgatcctgagtaccagctcattgtggagtgt
aacacattgtcggttgatatagaaaatgagattgaaattattaataaattcattcgtgat
aagtaccgcctcaagtttcctgagctcgggtctcttgtgcaccaccctatcgattatgca
cgtgtggtcaagaagatagggaatgaagttgacttaacccttgtggatcttgaagggctg
ctgccatcagccgtcattatggttgtttctgttacggcatctaccaccagtgggaaacct
cttcctgaggatgttcttcagaagaccatcgaggcttgtgatcgagcccttacactggat
gcatcaaaaaagaaagttctggattttgttgaaagcagaatgggctacattgctccgaat
ctttctgccattgttgggagtgcggttgctgccaaactcatggggacagctggtggtctt
tcgtcactagcaaagatgccggcatgtaatgttcagattctaggtgccaaaaagaagaat
ttggctggtttttctactgcatcatctcagtttcgtgttggttacattgaacaaacagag
gttcttcagaccacccctccttccttaaagatgcgtgcttgtcggcttttggctgcaaaa
tcaactcttgcagcacgtgttgactccattggaggtgatccatctggaactcaaggaaga
acttaccgtgaagaaattcgcaagaagattgaaaagtggcaagaaccgcctcctgcaaag
caacctaaaccacttccagtccctgattctgaacctaagaagaaaagaggtggtcgtcgc
cttcgtaagatgaaggagagatatgctattacagatatgcgaaagttggcaaacagaatg
cagtttggaattcctgaagagagctcacttggcgatggactaggagaaggatatggtatg
cttggtcaagctggaaatgggaagttgcgtgtatcagttggtcagagcaagcttgctgcc
aaagctgccaagaagtacaagggtaagcaatatagtagcggtggggcaacctctggtttg
acttcaagtttggctttcacacctgtgcagggcatcgatctcatagatccccaggcagat
gctaatagacttgggagtggaatgcagagcacatatttctcagaaacgggaacattttca
aagatcagaagaatttga
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