Erigeron canadensis (horseweed): 122608228
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Entry
122608228 CDS
T07610
Name
(RefSeq) SNW/SKI-interacting protein A-like
KO
K06063
SNW domain-containing protein 1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122608228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122608228
Spliceosome [BR:
ecad03041
]
Complex B
Other components
Prp19-related factors
122608228
Complex C
122608228
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SKIP_SNW
PI3K_1B_p101
FAM194
Motif
Other DBs
NCBI-GeneID:
122608228
NCBI-ProteinID:
XP_043637251
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Position
7:complement(33926614..33929560)
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AA seq
608 aa
AA seq
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MAALKEILPPAKSSATTFYDHSSDPWFKQRYSAPKEEEAAAAAVVKSSKIPLYNTAERFK
YRPSKAEHYGDGGAFPEIHYAQYPLDMGRKKDTSGQKTLPVTVDSHGNLTFDAIVKQNEN
AKKIVYSQRRDLVPKVLKDEEEEEEEDDEKQKEIEDTTQQTKAALEKIVNVRLSAAQPKN
VQTQSQDSKFIKYKPSQQSAAFNSGAKERIIRMVDMPVDPLEPPKFKHKRVPKANGSPPV
PVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKL
SEALYLAEQKAREAVAMRSKVQKEMMMKEKEKKELELRALAQKARFERTGAPAPIGNGSF
VPSDKDVMDIDEPVEREQEPRRVKDRDQPRESKEEREERSKREKIREERRRERERERRLE
AKDAAMGKKSKLTRDRDRDISEKVALGVASTGAQGGEVQYDQRLFNQDKGMDSGFGTDDQ
YNVYTKGLFTAQPTLSTLYRPKKDADDEMYGGADEQLEKIRKTDRFKPDKGFSGAGETSG
SRSGPVEFEKDVAEEADPFGLDQFITEVKGGKKPQVGSGGTMRASGGSSTREGYEGSGRS
RIGFQKGR
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggctgctttgaaggagatattaccacctgcgaaatcatcggcgactactttctacgat
cattcgagtgatccatggtttaagcagagatacagtgcaccgaaagaggaggaagcagct
gctgctgcggttgtgaaaagtagcaagattccgttgtataacacggcagaacggtttaaa
taccggccgtcgaaagcagaacattatggtgatggtggggcgtttcctgagattcattat
gcgcagtatcctcttgatatgggtaggaagaaggacacgtctgggcagaagacgttgcct
gttactgttgatagtcatgggaatttaacttttgatgctattgtgaaacaaaatgagaat
gctaagaagattgtttattcgcagcgtagggatttagttcccaaggttttgaaagacgag
gaagaagaagaagaagaggacgatgagaagcagaaggagattgaggataccacccagcag
acgaaagcggctcttgagaagattgtgaatgtcaggttgagtgctgcgcagcccaagaat
gtgcagacccagtctcaggattcaaagtttatcaagtataagccttcacagcagtcggct
gcgtttaattcaggtgcaaaggagaggattattaggatggtggacatgcctgttgaccca
ttagagccaccaaagtttaagcataagcgtgttcctaaagctaatggttcacctcccgtg
ccggttatgcactcgcctccacgacccgtgactgtcaaagaccaacaagattggaagatc
cctccgtgcatttctaactggaagaatccaaaagggtacacgattccacttgataaacgt
cttgcagccgatgggagaggacttcaggaagtgcagattaatgataattttgcaaagctt
tctgaagccttgtatttagcagagcaaaaagcccgagaagctgttgctatgaggtccaaa
gttcaaaaggaaatgatgatgaaagaaaaggaaaagaaagagctagaattgagggccttg
gctcaaaaggcaagatttgaaagaacgggtgccccggcgcctattggtaatggttccttc
gtaccatctgacaaggatgtgatggatatcgatgagcctgttgaacgtgaacaggaaccc
aggcgtgtgaaggatagggaccaacctagagaatctaaagaggagagagaggagcggagt
aagagagagaagatacgtgaagagagacgtagagagagagaaagagagagaaggttggag
gctaaagatgcagccatggggaagaagagtaagctcacaagagaccgtgaccgtgatatt
agtgaaaaggttgcactcggggtggcatctactggtgctcaaggaggtgaagtgcagtat
gatcaacgtttattcaatcaagataagggaatggactcaggctttggaactgatgatcaa
tacaacgtatatactaaagggttgttcactgcacaaccgactttatctactttatatagg
ccaaagaaagatgccgatgatgagatgtatggtggggctgatgagcagctcgagaagatc
agaaaaactgaccggttcaaacctgacaaggggttcagcggtgctggtgagacaagtgga
tcgagaagtggaccggttgagtttgagaaggacgtggctgaagaagctgatccgtttggt
ttggaccagtttattacagaggtcaagggagggaagaaaccacaagttggaagtggaggc
actatgagagcaagtggcgggtcgtctacacgagaagggtatgaagggtctggcaggagc
cgtattgggttccaaaagggacgctaa
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