Erigeron canadensis (horseweed): 122608672
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Entry
122608672 CDS
T07610
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
122608672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecad03036
]
122608672
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122608672
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
122608672
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
122608672
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
122608672
NCBI-ProteinID:
XP_043637697
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Position
7:33849572..33856055
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AA seq
1196 aa
AA seq
DB search
MKEEEVDRALLSSLGVTSANPDEIEQDILQQARNHVEQGSEVGGTADHEHLERRQNSEPS
STARTDVLNRLRAINVEIDAVACTVEDVKNFSRAEDDNDNEQGGLDAEQSILQASSNDLT
LQQALATDRLESLKRTKAQLEKHIASLGDEPKSNKDEKILRSIVKEEPKLKRKQKELPPT
NKKLKKRHKTVAFNDDDEFDAVLNAASAGFIETERDELVRKGILTPFHNLKGYERRIEEP
GPSNTIEEDDDLPSTSIARAVKLMSEAAQSRPTSKLLDSDSLPGLDMPARPFQRLRTPFK
NPQFRDSVEGTSKDSTRKKKRPLPEKRWRKVASREDNNLLEGIEDARGSSIEEDNQEDVE
DGGGNEASFVTLEGGLKIPDSIFSQLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQ
VLSFLGALHFSKMYKPSIIVCPVTLLRQWRREAKKWYPSFHVEILHDSAQDSSAKRKQIK
SDESDDDTTESDEEEILISRKDKKWDSLINRVLRSESGLLITTYEQLRILGEKLLDIEWG
YAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLP
VFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLPTKTEHV
LFCSLTSDQRATYRAFLASSEVEQIFNGDRNSLYGIDVMRKICNHPDLLERETAAQNPDY
GNPERSGKMKVVAQVLKVWKEQGHRVLLFAQTQQMLDILENFLINDSYTYRRMDGLTPVK
QRMSLMDEFNNSSDIFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQARERAWRIG
QTKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNDDRD
NGSTETSNLFGQLSENVNIVAPHLNNQDIQGLNGAAIAKDNDLSTGTKKSKKKDKEKVDD
TNGGETEETNILKSLFDAQGIHSAVNHDLIMNANDEEKVKLDEQASQVARRAAEALRQSR
MIRSQESISVPTWTGRSGTAGAPGSSSGRKFGSTVNSKLVTKIRTEEVASNNERFVAGAS
GGKALSSSELLAKLRGTQEQAVGDALEHQLGVGSSSNGRTRSSHNLVGVQPEVLIRQICT
FLQQRGGISGSASIVQHFKDRIPEKDLPVFKSLLKEIATLQKNPNGSSWILKPEYQ
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagaagaggtggatagagctctgttgagtagtttgggtgtaacgtctgcaaat
ccagacgagattgaacaagatatattacagcaggcaagaaaccatgttgaacagggcagt
gaagtgggaggaactgccgaccatgaacatcttgaaagaagacaaaacagtgaaccatca
tccactgcccgaacggatgttttgaacagattgagagccataaatgttgaaatagatgct
gttgcatgcactgttgaagatgtgaagaatttttcaagagccgaagatgataatgataat
gaacaggggggtttagatgcagaacaaagtattttgcaggcttcttccaatgatctaaca
cttcagcaggctctagcaactgaccgactggaaagcctgaagaggacaaaggctcagctt
gagaaacatatagcaagtttgggtgatgaacccaaaagtaataaagatgaaaagatcttg
cgatctattgtcaaggaagaaccaaaactcaagagaaaacagaaagaactgccgccgaca
aacaagaagttgaagaagcggcataaaacagtagcctttaacgatgatgatgaatttgat
gcagttctaaatgctgcttctgcaggattcattgaaacagaaagggatgagttggttcgg
aaaggaattctaactccgttccacaacctcaaaggatacgaacgtcgtattgaagaacca
gggccatctaatacaattgaagaagatgatgatcttccatctaccagcatagcaagagct
gttaaattaatgtcagaggctgcacaatctcgtcctacgtcaaagctattagattcagat
tcactgccaggtcttgatatgccagcccgtcctttccaaaggcttagaaccccctttaaa
aacccccagtttagggatagcgtggaagggacgtctaaagattcaactaggaaaaagaaa
aggcctttgcccgaaaagaggtggaggaaggtagcatctcgtgaggataataatctcctg
gaaggaattgaagatgcaagaggctcaagtatcgaagaagataaccaagaggatgtcgaa
gatgggggaggcaatgaagcttcttttgtgacacttgaaggtggattgaaaattccagat
tccatattcagtcagttgtttgattatcagaaggtgggtgtgcaatggttatgggagctt
cattgccaaagagctggtggaatcataggagatgaaatgggcctcgggaaaacgattcaa
gtcttatcttttcttggagctttacatttcagtaaaatgtacaaacctagtataattgta
tgtcctgtcactcttttgcgacaatggaggcgagaagcgaagaaatggtatccaagtttt
catgtggaaatattacacgattctgctcaagattcttccgctaaaaggaagcaaattaag
tcagatgaaagtgatgatgatactactgagagtgatgaagaagaaattctaatctccaga
aaagataagaagtgggattcgttgataaatcgtgttttgagaagtgaatctggtttgttg
attactacttatgaacagctacggattcttggagaaaaactgcttgacattgaatgggga
tatgcggtgttagatgaaggacatagaatccgaaaccctaatgcagaagttactttagtt
tgcaaacaattacagactgttcatcgtattataatgactggtgcacctattcagaacaag
ctaagtgaactttggtcattgtttgattttgtatttcctggaaagttgggtgttcttccg
gtgtttgaagcagagtttgctgttccgatttctgttggtggctatgctaatgcgtcgcct
ttacaagtatctactgcttacagatgtgcagttgttctgcgtgacctaatcatgccttat
cttcttcgaagaatgaaggctgatgtgaatgctcaccttccgacaaaaaccgaacatgtt
ctcttttgtagccttacatcagatcagcgggctacgtaccgagcatttcttgcaagctca
gaggtggaacaaatttttaatggagacagaaactccctttatgggatcgatgtgatgcgt
aaaatctgcaatcaccctgatttacttgagagagaaactgccgcccagaatccagattat
ggaaatccagaaagaagtggaaagatgaaagttgttgcacaggtactcaaggtgtggaaa
gaacagggtcatcgggttcttctttttgcgcagactcaacaaatgctcgatattcttgaa
aactttttgattaatgattcatatacatatagaagaatggatggactaaccccggtgaag
cagaggatgtctttaatggatgaatttaacaattcttctgatatattcatcttcattctg
accactaaagttggtggcttggggacaaacttaaccggtgcaaatagagtgattattttt
gaccctgattggaacccttcaactgacatgcaggcgagggagcgtgcttggcgtattgga
cagacaaaagatgtaactgtttatagattgataactcgtggaacgatagaagagaaagtg
tatcatcgacaaatatacaaacattttttgacaaataaaatcttgaaaaatccacagcaa
aaacgattctttaaggcccgagacatgaaagatcttttcacattgaatgatgacagagac
aatggcagtactgaaacatctaacctttttggtcagttatctgaaaatgtaaatattgtt
gcccctcatctgaataaccaagatatacaggggttaaatggagcagcaattgccaaagat
aatgatctttcaacagggacaaaaaaatctaaaaagaaagacaaggaaaaggttgatgat
accaatggaggagaaaccgaagaaacaaatatattgaaaagtctctttgatgctcagggg
attcatagtgcagtgaaccatgatttaattatgaatgctaacgatgaagaaaaggtgaag
ctcgatgagcaagcttcccaagttgcacgtagagccgctgaagcgctacgccaatcacga
atgatccggagccaagaaagtatctctgttccgacctggactgggagatccggaactgct
ggtgcaccggggtcatcttcaggcagaaagtttgggtcaactgtgaactctaaattggtt
actaaaatccgaactgaggaagtagcgtctaacaatgaacggtttgttgctggagcatcg
ggcggcaaagccctatcttcatctgaattacttgctaagcttagaggaacccaagagcaa
gcggtcggtgatgcgcttgagcaccaattgggcgtgggttcaagttccaatggtagaacc
cgatcatctcataacttggttggggtccagccggaagttctgattcggcaaatatgtaca
tttttacaacaaagaggtggaataagtggctctgctagtatagtgcagcacttcaaggat
aggatacccgagaaggatctgccagtattcaagtctcttttgaaggaaatcgcgacattg
cagaagaatccaaatgggtcttcctggattctaaaacccgagtatcaataa
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