Erigeron canadensis (horseweed): 122608764
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Entry
122608764 CDS
T07610
Name
(RefSeq) small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial
KO
K06949
ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.-
3.1.3.100
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00730
Thiamine metabolism
ecad01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
122608764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecad03009
]
122608764
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.100 thiamine phosphate phosphatase
122608764
Ribosome biogenesis [BR:
ecad03009
]
Prokaryotic type
GTPases
122608764
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RsgA_GTPase
MMR_HSR1
AAA_29
AAA_23
nSTAND1
ABC_tran
SMC_N
AAA_27
AAA_21
AAA_16
Ras
Roc
Adeno_IVa2
Il2rg
AAA_22
AAA_15
eIF-1a
AAA_28
Motif
Other DBs
NCBI-GeneID:
122608764
NCBI-ProteinID:
XP_043637791
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All DBs
Position
1:complement(43568784..43573165)
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AA seq
487 aa
AA seq
DB search
MTSLSISLFRHHHHHAPLISYAVHRRFSTFRSVSVIASRNRENLSKKSQQPSKHLLKARD
SVKHFSSLSPSLSPPITSADNLHLSPDQAIGKVASAQANFMRVVVEPEKILSENEGNGVE
LLCVVRNLLKKIKRRVLVGDKVLVGSIDWTDRRGMIENVFERKTEVLDPPVANVDHLLVL
FSLDQPKLEEFSLTRFLVEAESTRIPVTLALNKAELVDKETVISWKSKLRSWGYEPVFCS
VETKTGLDTLQFNLRDQTSVIVGPSGVGKSSLINAMRSNQFGFGAAEVDDWSNSILGSKW
LEDQRVGEVSARSGRGKHTTRHVSLLPLSGGGYVADTPGFNQPSLLKVTKQSLALCFPEV
RKILSASEPLKCAFSNCLHLGEPGCLVKTDWERYPYYFQLLDEIKIREEFQLRTLGTKRE
SDVRYKAGDMGIMQAEPRLQPKKHRRTSRKKMNQSFLDDVEAELEGDEDESFLEDDPIIK
AMENDNQ
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcactttcaatttcactcttccgacaccaccaccatcacgcgcctctcatttcc
tatgccgtacaccgtcgcttctccactttccgatcagtttcagtaatcgcctctagaaac
cgcgaaaacctatcaaaaaaatcacaacagccgagcaaacaccttcttaaagcacgtgat
tccgttaagcatttctcatctctatcgccgtcgctatcgccgccgatcacctctgccgat
aacctccacctctcgccggaccaagcgatcggaaaagtagcttccgctcaagcgaatttc
atgcgcgttgtcgttgaaccggagaaaatattgtctgaaaatgaaggaaatggagttgaa
ttgttgtgtgtggttaggaatttgttgaagaagattaagaggagagttttggtaggtgat
aaggtgttagtcggttcgattgattggaccgatagaagaggaatgattgagaatgttttc
gagaggaaaaccgaggtgcttgatccgcctgtagcgaatgtggatcatttactggttctg
ttttcgttagatcagccgaaattggaggagttttcgcttactaggtttttggttgaagct
gagtcgaccagaattccggttacacttgctttgaacaaggctgaacttgttgataaagag
acggtgatttcatggaaatccaaacttcgcagttggggttatgaaccggttttttgcagt
gttgagaccaaaactggacttgatactctgcagttcaacctgagagatcaaacctctgta
attgtgggtccaagtggcgttggaaagtccagtttgatcaatgctatgagaagcaatcaa
tttggatttggtgctgcagaagtggatgattggtctaattctattttaggaagcaagtgg
cttgaagatcaacgagttggagaagtgtcagcaagaagtggcagaggaaagcacacgact
cgacatgtctcattgcttccactatctggtggaggatatgttgcagatactcctgggttc
aaccaaccaagtctattgaaagtaacaaaacagtcccttgccctgtgcttcccagaggtt
cgcaagattctttcagcaagtgaaccattgaaatgtgcatttagtaattgtttacatctt
ggggaaccaggctgccttgtaaaaactgattgggaaagatatccatactactttcaattg
cttgatgagataaaaattagagaggaattccagttgcgaactcttggaaccaaacgcgaa
agtgatgtaagatacaaagctggagatatgggcatcatgcaagctgaaccacggttacag
ccaaagaaacatagaagaacttcgcgtaagaagatgaatcaatcttttttagatgacgtt
gaggcagaacttgaaggtgacgaagatgaaagctttttagaggatgatcccattataaaa
gcaatggagaatgacaatcagtaa
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