Erigeron canadensis (horseweed): 122609223
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Entry
122609223 CDS
T07610
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3-like
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122609223
03036 Chromosome and associated proteins [BR:
ecad03036
]
122609223
Spliceosome [BR:
ecad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122609223
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
122609223
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_PRP39_N
RRM_1
HAT_Syf1_CNRKL1_N
Suf
HAT_Syf1_CNRKL1_C
TPR_14
UTP6_C
NRDE-2
TPR_19
xRRM
PNISR
Motif
Other DBs
NCBI-GeneID:
122609223
NCBI-ProteinID:
XP_043638216
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All DBs
Position
7:28176365..28182958
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AA seq
530 aa
AA seq
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MAYLKFEQSSGDPARVKILYERAISEFPVSGDLWIDYTDYLNKTLKADKMLREIFSRATR
NCPWVGELWVRFCYIFMLYLERNRGFEKELSDVFERSLQCTFFTIDEYADIFLTRMDGLR
RRILAAKEPDDDSLINISLIRDTFQRACDYLSPQLKNTYSLLQIPSYWARLESTIEKDTT
AAREVWESLLKNSRSMLEAWKGYINMKIQMGNISGARSIYKRCYTKRFSGTGSEDICNSW
IRFEREFGTLDDFEHASQKVRPRLQELRFFRLQEESKFIASSTTDDPTYKENKGEKRKSV
SDVCNEESPAKRQKDDSRHQKKKAHSNKNSAKAHKVTNTVTPNEMPHGEDDDIKPKEPTT
EKSKQYNDECTAFVSNINLKATNEDLKSFFNDVGGVVAIRILFDKFTKKSRGLAYVDFSD
DIHLEAAVAKNKQMLLGKKLSILRSDPKGKRKGSVGPKSPTEHGQGKNGEDYRHGKVELK
GRNTFAVPRTVRALGWSSTKNPASSSAATKGEEGRPKTNKELRNILLKTT
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggcttacttgaagtttgaacagtcatctggagatcctgctcgtgttaaaatcctgtat
gaacgcgcgataagtgaatttccggtatctggtgatctatggattgattacaccgactac
ctcaacaaaacactaaaggcagacaaaatgttgagagagatatttagccgggccaccagg
aactgtccctgggttggagaactatgggttcgtttctgttacattttcatgctatatctt
gaacgcaatcgtggttttgagaaagaactttctgatgtgtttgaaagatctttgcaatgc
acatttttcactatcgatgagtatgcagacatatttttgacgagaatggatggcctgagg
aggagaatcttggctgcgaaagaaccggatgatgatagcttaataaacatatctttgata
cgggatacttttcagagggcatgtgattatttgtcaccacagctgaagaacacatatagt
ttgctgcaaatacctagctattgggctcgtctggagtctacaatcgagaaggacacaacc
gcagctcgtgaagtatgggagagcttgcttaaaaacagtaggtctatgttagaagcctgg
aaaggatatattaacatgaaaattcagatggggaacataagtggagctagatctatatac
aagagatgctataccaaaagattttctgggacaggctccgaggacatatgtaactcatgg
atacggtttgagagggaatttggtacgctagatgattttgagcatgcttcacagaaggta
aggcctcggctgcaggagctacggttttttaggctacaggaagaaagcaaatttattgcc
tcatcaactacggatgatcctacttataaggagaataaaggtgaaaagagaaagtctgtt
tcagatgtatgtaatgaagagtcaccagcaaagcggcaaaaagatgattcgaggcatcaa
aagaagaaagctcattctaataagaattcggctaaagcacataaagtgacaaacactgtc
accccgaacgagatgcctcatggtgaagatgacgacataaaacctaaagaacccacaacg
gagaaatccaagcaatacaatgacgaatgcactgcctttgtatcaaatattaatttaaag
gctactaatgaggacttaaaaagtttcttcaatgatgttggtggcgttgtagccatccga
atattgtttgacaagttcacaaaaaaatcaaggggattagcatatgtagacttctctgat
gatatacaccttgaggcggctgtggctaagaataagcaaatgcttcttggaaagaagttg
agcattttacgttctgatcctaaaggcaaaagaaaaggatctgtgggacccaaaagtcca
acagaacatggtcaggggaaaaatggagaagattatagacatggaaaagttgagctcaag
gggagaaacacttttgctgttccaagaacagttagagccctaggttggtctagcactaag
aatccggcatcatcatcagcagctacaaaaggtgaagaagggaggcctaaaacaaacaag
gagctgcgaaacattttgttgaagacaacgtga
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