Erigeron canadensis (horseweed): 122609392
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Entry
122609392 CDS
T07610
Name
(RefSeq) putative tRNA pseudouridine synthase isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecad03016
]
122609392
Enzymes [BR:
ecad01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
122609392
Transfer RNA biogenesis [BR:
ecad03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
122609392
Prokaryotic type
122609392
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
122609392
NCBI-ProteinID:
XP_043638374
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Position
7:complement(30930592..30936226)
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AA seq
513 aa
AA seq
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MSAFIPIPIFTLSFPPLILYNQTPPKIFISNPNNKFKTNSTRVVSCSSFSQSQETLAPLQ
VEHSVNSNTSGKKWEGFRKRKVLMRVGYAGYLDYRAIEKELEIAIYRAGGIRDSNFGDLK
KITWATSSQIDDEVHSLSTMISFKLEIPENAWIDDPNGIALVDIVNTYLPINIKVFSILP
SQKSFNAKEECNMRKYGYLLPLEVIGITSNFNEAEIEHHLSVFNDILCFFEGKHPFHNYT
IPSEYHAQQSPDNEIDESNGEESVEPEYGECDGEEVHRTYEMVMEYLNEESTSLRCTDSD
KNLVDESDANNDSLNDLIIFAKWLHEPDENDRITDIHFRRIFQCSCGKPKHSNGVSYVEI
SICGESFMPYQIRKMVGSAVAAKRGLLPRDVIPLSLNKFTRFVLPAAPSEMLFLRWNHFI
LEKESGKSIRPEILAAVESEEILKDVEDFYELIMLPQLSEFLDPLKSPWKEWVELLDENT
RIPDSQLGEVRNAWVTWEENFWVKTDAALYYSG
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccttcattcccattcctattttcacactctcattccctcctttaattctttac
aaccaaacacccccaaaaatctttatttcaaaccctaataataaattcaaaacaaattct
accagagttgtttcttgttcatcgttttctcagtctcaagaaaccctagctcctttacag
gttgaacattctgtaaatagtaatactagtggtaaaaaatgggaaggtttccggaaaagg
aaggtgttaatgcgtgtcggctatgccggttatctcgattaccgagcaatagagaaagag
ttggaaatagccatttacagagcgggtggaattcgtgacagtaactttggagatttgaaa
aagataacttgggccacgagtagccaaatagatgatgaagttcattctttatcaaccatg
atatcgtttaaattggaaatacctgagaatgcttggattgatgacccaaatgggatagca
cttgtggatattgtcaatacgtatcttcctataaatattaaagttttcagcattctacct
tcacaaaagagttttaatgctaaagaagaatgtaatatgcggaaatatggttacctcctt
cctttggaagtcattgggatcactagtaacttcaatgaagctgaaatagaacaccactta
tcagtcttcaatgatatactttgtttttttgagggaaaacatcctttccataactataca
atcccatccgagtatcatgcacaacagtctcctgacaatgagattgatgaaagtaatgga
gaagaatcagtggaaccggagtatggtgaatgtgatggagaagaagttcacaggacatat
gaaatggtcatggaatacctcaatgaagaaagcacctcattaagatgcaccgactccgat
aaaaatctagttgacgaatctgatgcaaataacgatagtttaaatgatttgataatcttc
gcaaaatggttgcatgaacctgatgagaatgaccgcataactgatatccatttcagaaga
attttccagtgttcatgtggaaagccgaaacattcgaatggagtaagttatgttgagatc
tctatatgtggggagtctttcatgccatatcaaatccgcaaaatggtgggatcagcagtg
gcagcgaagcgtggactactcccaagagatgtaattcccctatcacttaacaaatttaca
cgttttgtcctgcctgctgctccatctgaaatgttatttttaagatggaaccatttcatt
ttggaaaaggagtctggaaaatctataaggcctgaaattctggcagcagttgaatcagaa
gaaatactaaaggatgttgaagatttctatgaattaatcatgttgcctcagctttcagaa
tttttggaccctttgaaatctccttggaaggagtgggtcgagttattagatgaaaacacg
agaattccagattctcagttgggtgaagtcaggaatgcatgggttacatgggaggaaaat
ttctgggtcaagactgatgctgcgttatactattctggttga
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