Erigeron canadensis (horseweed): 122609663
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Entry
122609663 CDS
T07610
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122609663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122609663
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122609663
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
MMM1
Motif
Other DBs
NCBI-GeneID:
122609663
NCBI-ProteinID:
XP_043638552
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All DBs
Position
8:47489474..47495021
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AA seq
1197 aa
AA seq
DB search
MDFSKTTLYQRTRSCYDKFYLEYNEKKGNKRIRKRDGNREEEEKTGKSSEGLNKGKSEID
GGGSGKKKRGIKRKKDLGKVSNKVINDSEIEDEDYDDDKEFVVEDKKVKRGQSSKSFENV
SQISLIDELDDDDVKLSKKNERKQSKSDVERVSGSGKSKNKFVKDSGADRNYKGARETLK
VVRKSTRTNDAQLRSDDVMTKSFGRNDKKDADLGFSGREIDESDDEEGVSYLGDNLACLD
DYDPSFSSRVESNEVKVSPVVELDSIRVDVDGGGSQSLKLSEEKKVNSQRVESTEDAAVA
EDVTIISLSSSSDYVDDEDQSSIDGGDSRIQNVPNIVDWTEVSVKRILSEDYERTKNKKA
NVFETRITKKRNGSGIDMWKAMEGGLKRRRTDNDTFVHSVDEMGNQEAGARTVTKYDQFG
NKVDVAKIFTDSLREDGDGGDMVLRSYMISKEEPLECSPFKETPVEKVCSYKFRFEDEDD
IEPKKSESEIEVDELFKEMGESLQSLEIGCSSTTVVNCGDADSMVEGKDQTTCCRRGKHR
LTINDQFGIICRCCSYVEMEVRDILPPLSKNGKGGHGRPEYDHDRTDSMKFSDLPAADCY
DDSHHEARWSNYDEGTVWDLVPGVKESMYPHQREGFEFIWNKIAGSTYIDKLEKCLTNDG
SGCIISHAPGTGKSRLTIVFLQAFLKMYPDARPLIIAPRSMLLTWEEEFKKWDVDFPFYN
VNSNECSGQEDAVALSVLKQFGNVRSIHCNRLLKLYSWKKNSSVLGITYRLFESLAGEEG
KRKKASNSDDEQIKKILLQVPSLLVLDEGHTPRNDTSLMWKALLNVKTKRSIILSGTPFQ
NNFAELYNTLCLVNPLLSYGLSSLRSDMFSKKRGWKNNLARGQWDSITSSSKWSQHSIHE
IKAVIDPFVHVHKGTILQERLPGLRDALVVLKPTRTQQTLLGKMYGKKRNLEHDHVMSLV
AVHPSLLPANSLGNEGFLKMLKVFENDPSAGVKTNFLMELIKLSGAHNEKVLVFCQFIKP
LDFIKELLKTNFSWVEGRDFLYMDGQQEEKLRQNSINTLNDPKSEVKLLLASMKACSEGI
NLVGASRVVLLDVHWNPSVERQAISRAYRLGQKKVVYVYHLVTGSMEGEKYIRQVEKSHL
SELVFSSKNRDSSIPKISSTVSEDRILEEMVQHEKLRDMFEKVIYQPKEADLFDTFG
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggatttttcaaagactacattgtatcagcgaacacgatcttgttatgataaattttac
ttggagtataatgagaaaaagggcaataagaggattcgcaaacgtgacggaaatagggag
gaggaggagaagactggtaaatcaagtgagggattaaacaaggggaaaagtgaaatcgat
ggtggtggttcgggtaagaagaagagagggattaaaaggaagaaagatttggggaaagtt
tcgaacaaggttattaatgattcggagattgaggatgaagattatgatgatgataaggaa
tttgtagttgaagataagaaagtgaaaagagggcagtcttcaaaaagttttgagaatgtg
agtcagattagtctaattgatgaattggatgatgatgatgtgaagctgagtaagaagaat
gagaggaaacaaagtaagtccgatgtggaacgggtttctggaagtgggaaaagcaagaac
aagtttgtgaaggattctggtgctgataggaattataagggggcgagggaaaccttgaaa
gtggttcgtaagagtacgaggacaaatgatgctcaattgagaagtgatgatgttatgacc
aagagttttgggaggaacgacaagaaagatgctgacttgggtttcagtggccgtgagatt
gatgaaagtgatgatgaagaaggtgtatcatacttgggcgataatcttgcatgtttggat
gattatgatccgtcatttagttctcgtgtggaaagcaatgaggtgaaggtgagtccagta
gtggagctggactcgattcgggtagatgtggatggtggcggttcacagagtttaaagtta
tctgaagagaaaaaggttaattcgcagagggtagagtcaactgaggatgctgcagttgct
gaggatgtgacaattattagtttgagttcttcgagtgattatgtggatgatgaagatcag
agttccatagatggtggtgattctagaattcaaaatgtgccaaatattgttgattggact
gaagtttctgtaaaacgtatattaagtgaagactatgagaggacgaagaataagaaagct
aatgtttttgagaccaggattactaaaaagcggaatggtagtggcattgatatgtggaaa
gctatggagggtggtttgaagagaagaaggactgacaatgatacttttgtccattcagtt
gacgaaatgggcaaccaagaggcaggggcgaggactgttacaaagtatgatcagtttgga
aataaagttgatgtggctaagatcttcacagattctttaagagaggacggggatggcgga
gatatggtcctccgaagttacatgatatctaaagaggaacctctagagtgcagtcctttt
aaagaaacccctgttgagaaagtatgctcgtataagtttagatttgaagacgaggacgat
atagagccaaagaagtcagaaagcgagattgaagtggatgagcttttcaaggagatgggc
gagagcttacagtcgttagaaattggatgctctagcactactgtggttaattgtggtgat
gctgactctatggtggaaggaaaagatcaaacaacctgttgtcgccgaggaaaacatcga
cttaccattaatgaccagtttgggattatctgtagatgttgttcttatgttgagatggaa
gtaagagatattttaccccctctgagtaaaaatggaaagggtgggcatggcaggcctgaa
tatgaccatgacagaacagacagcatgaaattttcagaccttcctgcagctgactgctat
gatgacagccatcatgaagccagatggagtaactacgatgaagggacagtttgggacttg
gttcccggggttaaagaatccatgtatccacatcagcgcgagggtttcgagttcatttgg
aataaaatagctggtagtacctatattgataagctagaaaaatgtcttactaatgatgga
agtggttgcataatctctcatgcccctggaaccggcaaaagccgtctcacaatcgttttc
ctccaggcgtttttaaaaatgtatccagatgcaaggccgttgattatcgctcctcgttct
atgctgcttacctgggaagaagagtttaaaaaatgggatgttgattttccgttttataac
gtgaacagtaacgaatgttctggacaggaagatgcagtggcgttaagtgttttaaaacaa
tttgggaatgtaagaagtatacactgtaatcgtttattgaagttatattcctggaagaaa
aattcaagtgttttggggatcacatatagattgtttgaaagcctagctggtgaagaaggg
aagagaaaaaaagcgtcgaacagtgatgatgagcagataaagaaaattctccttcaagtt
cccagccttttagtacttgatgaagggcacactccccgaaatgatacaagtcttatgtgg
aaggcgttgctaaatgtcaaaacaaaaaggagcatcattttgtccggaactcccttccag
aacaattttgctgagttatataataccctgtgcttggtgaatcccttactatcgtatggg
ctctcatctttaagaagtgacatgtttagcaaaaagcgtggatggaaaaacaatttagct
agagggcaatgggattctataacaagctctagtaagtggagtcaacatagtatacatgaa
attaaagccgtgattgacccttttgtccatgtacataagggaacaattcttcaagaaagg
cttcccggtttaagggatgctctggtagttttaaagcccacaagaacgcagcaaacgctt
cttggaaagatgtacgggaaaaaacggaatctagaacacgaccatgttatgtcattagta
gccgttcatccttcactgctccccgcaaactctcttggtaatgagggttttcttaaaatg
ctaaaagtgtttgaaaacgaccctagtgccggagttaagactaattttttgatggaactt
attaagctcagtggagcgcacaatgagaaggttttagttttttgtcagttcatcaagcca
ctggattttataaaggaacttctgaaaactaattttagctgggttgaaggcagagatttt
ttgtacatggatggacaacaagaagagaagcttcggcaaaactcaatcaatacgcttaat
gatcctaaaagtgaagtaaagttacttcttgcatccatgaaggcgtgctctgaagggatt
aatttggtgggtgcttcaagagttgtgttgcttgatgttcattggaatccatcagtggag
agacaagctataagccgggcttatagacttggtcaaaagaaagttgtttatgtttaccat
ctagtcacgggatcaatggagggtgagaaatacataaggcaggttgagaagagtcattta
tcagaattggtcttttcttcaaaaaatagagacagttcgattcctaaaatatcatctaca
gtttcggaagatagaattttagaagaaatggtgcaacatgaaaagctaagggacatgttt
gaaaaggtgatttaccaaccgaaagaagcagatctatttgacacttttggttaa
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