Erigeron canadensis (horseweed): 122609744
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Entry
122609744 CDS
T07610
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03030
DNA replication
ecad03420
Nucleotide excision repair
ecad03430
Mismatch repair
ecad03440
Homologous recombination
ecad03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122609744
03420 Nucleotide excision repair
122609744
03430 Mismatch repair
122609744
03440 Homologous recombination
122609744
03460 Fanconi anemia pathway
122609744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecad03000
]
122609744
03032 DNA replication proteins [BR:
ecad03032
]
122609744
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122609744
Transcription factors [BR:
ecad03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122609744
DNA replication proteins [BR:
ecad03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122609744
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122609744
MMR (mismatch excision repair)
122609744
DSBR (double strand breaks repair)
HR (homologous recombination)
122609744
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CDC24_OB3
zf-CCHC
DUF223
DUF7289
Motif
Other DBs
NCBI-GeneID:
122609744
NCBI-ProteinID:
XP_043638626
LinkDB
All DBs
Position
8:complement(44902648..44906871)
Genome browser
AA seq
819 aa
AA seq
DB search
MEVKLTEGSITVLSSKKWQELGVKPVLQLYQIRLLNSQPERYGLVLSDGLRLQQGMLAIQ
LNHLVKSERLNKGSVIQLKEFVCNAVRDRIIIIVTDLDVLHETYNIIGEPERCTSDPLIP
AAPTQSNNQPATTVGSQVFMAVPQAGSVPPPNYTARTPDHSPGHGAGLQSYGNAPSNLEH
VSSIYPRADSVTANSLPSAYTRPAQPTHNQPPPMYMNRGPIAKNEAPPRIIPIAALNPYQ
GRWTIKARVTAKSELRRYNNAKGDGKVFSFDLLDSDGGEIRTTCFNAVADQFYEQIEVGK
VYVISKGNLKPAQKAFNHLKNDHEIMLDHTSTIQPCFDDDGSIPKQQFHFRPIAEIEGLG
NNTILDIIGVVYKITPSASIQRKNGTETQKRTLELKDMSGTSVELTLWGNFCNKEGQTLQ
TMCDSGVFPVLAVKAARVNEFNGKSVGTIATSQICIEPDSSEALRLKAWYDDCGSKTTSV
SLSKAVLRTDERKTISRIKDEKLGTSDKPDWITVSATVMHFGIENFCYTACPLIRESRQC
SKKVTNNGDGKWRCDTCDQSSDECDYRYILRLQIQDHTGSTSVTAFQETGAEIMGVAAKE
LYYIKYEERDEERFSEIIRSVVHTKYNFTLKVKEETYNDDPSVKCTVSKVERIKFSSNTS
FFLDFLKKDEHTSIGSKIENPVGLSAPFSNNIGSVGGLGRQAALQANQTGLSSMGNSGSL
DRQAVLQANQTGHFGKQFDIPSFGMGCSSCGDLGHSTSGCPSVGNASGRANSLPSGGASG
NCIKCNQPGHWPKDCPRENNVKFEYNASVAAGRYGTAFG
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgaaactaacagaaggatcaataacagtgttatcaagtaagaaatggcaagaa
ttgggggtgaaaccagtgctccaattgtatcagattaggcttcttaatagtcaacccgaa
agatacggattagttttgtcggatggtttacgtcttcagcaaggaatgcttgctattcaa
ctcaatcatttggttaaatctgaacgcttgaataaaggctctgttattcaattgaaagag
tttgtttgcaacgccgtccgtgatcgtatcatcatcatagtcaccgaccttgatgtgcta
catgaaacgtataatattattggtgaaccagaaaggtgcacaagcgatcctcttatacct
gcagcaccaacgcagtcaaataatcagccagcaacaactgtgggcagtcaagtgtttatg
gccgttccacaagctggttctgttccaccacctaattatactgctagaactccagatcac
tctcctgggcacggtgcaggtttacagtcttatgggaacgctcctagtaatttggaacat
gtgtcttccatatatccaagagcagattcagttactgctaactcacttccatctgcatat
acacgcccagctcaaccaacacataatcaaccccctcctatgtatatgaacaggggaccc
attgcaaaaaacgaggcaccgccaaggatcattcccattgctgctcttaacccatatcag
ggtcgttggactattaaagcccgcgtgactgctaaatcagagcttagacgctacaacaat
gcaaaaggagatggcaaagttttttcttttgaccttctcgattctgatggtggtgaaata
aggacaacatgcttcaatgctgtggctgatcaattctatgagcaaattgaggttggtaaa
gtttacgttatttcaaaaggcaacctgaaaccagctcaaaaagcttttaatcacctgaag
aatgatcatgaaattatgctggatcatacatcaacaatacaaccttgctttgatgatgat
ggttcaattccaaagcagcaatttcatttccgtcccattgctgaaattgaaggcttgggt
aacaacactattctggatatcattggtgtcgtttataagataactccttcagcttctata
cagaggaaaaacggtaccgagactcaaaaaagaacccttgaattgaaggacatgtctggc
acaagtgttgagttaactttgtggggaaacttttgcaacaaagaaggacaaacactccaa
accatgtgtgattctggagtatttcctgttttggctgtgaaagctgctagagtgaatgag
ttcaatggtaagtctgtagggaccattgccacaagccagatatgcatagagcctgattcc
tccgaggctcttaggctgaaagcatggtatgatgattgtgggagtaaaactacgtcggtt
tcattgtcaaaggctgttctgcgtacagatgaacgtaaaactatttcccgaataaaagat
gaaaagcttgggacctctgacaagccagattggatcacagtcagtgccactgtaatgcat
tttggaattgaaaacttctgctacacagcatgccccctcataagagagagtcgacaatgc
agcaaaaaagttactaataatggcgatgggaaatggcgatgtgacacgtgtgatcaaagc
agtgatgaatgtgactacagatacatactgcgtctacaaatacaagaccatactggttca
acatcggtaacagcatttcaggaaaccggtgcagagataatgggggttgctgctaaagag
ttgtattacataaaatatgaagagcgagacgaagagagattttcagaaattataaggagt
gttgttcatacaaaatataattttacgctaaaagtgaaagaagagacatataatgatgat
ccttctgtgaagtgcactgtttctaaagtagaaaggataaagttttcatcaaatacaagc
ttttttctggattttttaaaaaaagatgaacacacatctataggctcaaagattgaaaac
cccgttggtttgtctgcaccttttagcaacaacattggaagtgttggggggcttggtcgg
caagcagctttacaagcaaatcaaactggtttgtctagcatggggaattccggcagtctt
gatcggcaagcggttctacaagcaaatcagacaggtcattttgggaaacaatttgatatt
cctagctttggtatgggctgcagcagttgtggcgatctaggccatagcacttcaggctgt
ccaagtgttggaaatgcttcaggaagagctaacagtttgccatctggaggtgcctctggc
aattgtattaaatgcaatcaacctggacactggcccaaagactgtccccgtgagaataat
gttaaatttgagtataatgcaagtgtggctgctggaagatatgggactgcatttggttaa
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