Erigeron canadensis (horseweed): 122609903
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Entry
122609903 CDS
T07610
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122609903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122609903
Spliceosome [BR:
ecad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122609903
Complex C
U5 SnRNP specific factors
122609903
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
122609903
NCBI-ProteinID:
XP_043638787
LinkDB
All DBs
Position
8:30376212..30383338
Genome browser
AA seq
2278 aa
AA seq
DB search
MPPEHIRKVMNEHGDMSSKRYRHDKRVYLGALKFVPHAIYKLLENMPMPWEQVRNVKVLY
HVTGAITFVDEIPWVIEPVYLAQWGTMWIMMRREKRDRKHFKRMRFPPFDDEEPLLSYGE
NLLDVDPLEPIQLELDEVEDSAVCDWFYDHKGLVKTKFXNGEGYRKWDLSVDIMATLHRL
AGQLLSDLTDRNYFYLFDVASFVTAKSLNVCIPGGPKFEPLFRDMEKGDEDWNEFNDIGK
LIIRSPLRTEYRVAFPYLYNNRPRKVRLGVYHVPMVMYMKTDDPDLPAFYYDPLLHPITC
SAKKDYNPDYAAVDYEDDDFWLPEGVEPLLTNTALYTDNTAAGISLLYAPRPFNMRSGRM
RRAQDIPIVSEWYKEHCPSSFPVKVRVSYQKLLKCFVLNELHHRQPKAQNKKNLFQSLKA
TKFFQSTELDWAEAGLQVCKQGHNMLNLLICRKNLNYLHLDYNFNLKPVKTLTTKERKKS
WFGNAFHLCREILRLTKLVVDANIQYRLGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRL
MRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLAR
QFEGRHSKGVAKTVTKQRVESHYDLELRGAVIHDLVDAMPEGIKQNKSKTVIQHLSEAWR
CWKANIPWKVSSLPAPIENVILRYVKSKADWWTNVTHYNRERIRRGSTVDKTVCKKNLGR
LTCLWLKSEQERQHNYLKDGPSVSPEEAVAIYTTTLHWLESRKFTTIPFPPLSYKHDTKL
LILALERLKESYSGNVRLNQLQREELGLIEQVYDNPHETLARIKRHLLTMRAFKEVGIEF
MDLYNCLVPVYEIDPLEKITDAYLDQFLWFEADKKHLFPNWIKPADSEPPPLLVYKWCQG
INNLQGIWDTGDGECVVMLQTKFEKLFEKIDFTMLNRLLKLVLDHNIADYITAKNNVVLS
YKDMSHTNSYGLIRGLHFASFVAQYYGLVLDLLTLGLTRASEIAGSPQMTNEFATFQDTK
VETRHPIRLYSRYIDKVHMLIRFTHTEARDLIQRFLTEHPDPNNENMVGYNNRKCWPGDA
RMRLMKHDVNLGRSVFWDLKNCLPRSITTLEWQNSFVSVYSKDNPNLLFSMCGFEVRILP
KVRVTQEAFSNMKDGIWNLQNEMTKELTAVAFLRVDDEQIKEFENRVRQILMSSGATTFT
KVVNKWNTALIGLMTYFREATINTRELLDLLVKCENKVQTRIKIGLNSKMPSRFPPVIFY
TPKEIGGLGMLSMAHILIPQSDFRYNRQTDVGITHFRSGMSHGADQLIPNLSRYIQSWES
EFIDSQRVWAEFAIKRQLAQSTNKRLSVEDFDDTYDRGIPRINTLFQKDRHTLAYDKGWR
VRTEFXQYQILKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYIGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFVAHRWPMSKPSLVAESNDVFDQKASNKYWIDVQLRWGDYDSHDIE
RYTRAKFMDYTTDNMSIYPSPTGVMVGIDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSN
PALYVLRERIRKGLQLYSSDPTEPYLSSQNYGEIFSNQLMWFVDDTNVYRVEARKTFEGN
ITAKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRRGQLAKWKTAEEVAALVRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIMKFGDLILKASEPQMVLF
NIYDDWLKSISSYTAFPRLILILRALHVNNEKARMLLKPDKTVVTEPHHIWPSLTDDQWV
KVEVALQDLILSDYSKKNHVNTSALRQSEIRDIILGAEITPPSQQRQQIVEIEKQAKESS
QLTAVTTRTTNIHGDELIVTTTSPFEQAAFASKTDWRMRAISAANLHHRVNHIYVSSKDL
NQTGYTYVMPKNLLKKFICIADLRTQISGYLYGVSPPDNLQVKEIRCIVMPPQWGTHQQV
HLPSSIPEHDFLKDLEPLGWMHTQPNELPQLSPHDISFHAQILENKKQWDREKSIILTCS
FTPGSCSLTAYKLTTAGYQWGRANKNTGSNPHGYLPTHYEKVPLLLSDRFLGFYMVPDDG
LWNYNFMGVKHTVSMNYGIKLGNPHEYYHEDHRPTHFLEFSNLEEGHRSVGDQEDTFS
NT seq
6837 nt
NT seq
+upstream
nt +downstream
nt
atgccaccagaacacattagaaaagttatgaatgaacacggagatatgtcgtctaaacgt
taccgacacgataaacgtgtttatttaggagcacttaagtttgtccctcatgctatttac
aaattgttagaaaacatgccaatgccgtgggaacaagtccgtaacgtaaaagtattgtat
catgttactggggccattacttttgttgatgaaattccgtgggtaattgagccggtttat
ttagcacaatgggggacaatgtggattatgatgagaagggaaaaacgagataggaagcat
tttaaacgtatgcggtttcccccttttgatgatgaggaaccacttttgagttatggtgag
aatttgttagatgtggacccgttggaacctattcagttagagttggatgaggttgaggat
tctgcggtttgtgattggttttatgatcacaagggtttagttaagacgaagtttngtaac
ggggagggttatagaaagtgggatttgtcggtggatataatggcgacgttgcataggtta
gcagggcagttgctttcggatttgactgataggaattatttttatttgtttgatgtggca
tcgtttgttactgctaaatcgcttaatgtgtgtatacctggtgggccaaaatttgagcct
ttgtttagggatatggagaaaggagatgaggattggaacgagtttaatgatattggtaaa
cttattattcgatcgcctttgaggactgagtatcgggttgcttttccttatttgtataat
aataggccgaggaaagttaggctgggcgtttatcatgttcctatggttatgtatatgaaa
acagatgatcctgatttgcctgcattttattatgatcccttgttacacccgataacttgt
tctgctaaaaaagattataatcctgattatgctgctgttgattatgaggatgatgatttc
tggttgccagagggcgtcgagcctttgcttacgaacacagctttatacacggataataca
gctgctggtatttctttgttgtatgcaccacgcccctttaatatgagatctggcaggatg
agacgtgctcaagatattcccattgtgtctgaatggtacaaggaacattgtccttcatcg
tttccagttaaagttcgtgtcagttatcagaagttgttaaagtgttttgtattgaatgag
ctgcatcacagacagccaaaagctcaaaataagaagaacttgtttcagtctcttaaggct
accaagtttttccagtcgacagaacttgattgggctgaagcagggctgcaagtttgtaag
cagggtcacaacatgctcaatttgttgatctgtaggaagaatcttaactaccttcatcta
gactacaattttaatttgaagcctgttaagactctcactaccaaggagcgtaagaagtca
tggtttgggaatgcttttcatctttgtcgtgaaatcttgcgtttaactaagcttgttgtt
gatgccaatatccagtatcgtttggggaatgtggatgcgtttcagttggctgatggtctt
cagtatacattctcacatgttggacagttgactggtatgtatcgttataaatacagacta
atgagacagattcggatgtgtaaagatttgaaacatttgatttattacaggtttaatact
gggccagttgggaagggacccggatgcggtttctgggcacctatgtggagggtgtggttg
tttttccttcgtggtatagtgcctctactagaaaggtggctcgggaatttacttgctcgc
cagtttgaggggaggcattcaaaaggggtagctaagactgttacaaagcaacgtgttgaa
agtcattatgatcttgaacttcgtggtgctgtgatacatgatcttgttgatgctatgcca
gagggaataaagcagaataagtcaaaaacagttatacagcatttaagtgaagcatggcgc
tgttggaaggcaaatatcccatggaaggtttctagtttaccggctcctattgagaatgtg
attcttcgatatgtgaagtcaaaagctgattggtggactaatgttactcactataaccgt
gaacgtataaggaggggtagcacggttgataagaccgtttgtaagaaaaatttggggaga
ttgacttgtctttggctgaagtctgaacaggaacgccagcacaactacttgaaagatggt
ccatctgtgtctccagaagaagccgtggctatttacactaccacgcttcattggttggaa
tctagaaagttcacaaccataccttttcctccattgtcttacaagcatgacacaaagctt
cttattcttgctctcgagaggcttaaggaatcttacagtggtaatgtgaggttaaatcag
ctccaaagagaagaattgggattgattgaacaagtttatgacaatccacatgagacgtta
gcaagaattaagcgtcatcttcttaccatgcgtgcttttaaagaagttggcattgagttt
atggatttatacaactgtctggttccggtttatgagattgaccctctcgagaagatcaca
gatgcatatcttgatcagttcttatggtttgaagctgacaaaaagcatctctttccgaat
tggatcaagcctgcagattcagaaccgccaccactattggtttacaaatggtgccagggg
ataaataacttgcagggtatatgggacactggtgatggggagtgtgtagtgatgcttcaa
acgaagtttgagaagctctttgagaagattgattttactatgcttaacaggcttctaaaa
ctggtccttgatcacaatattgctgattatatcacagcaaagaacaatgttgtgttgtca
tataaagatatgagtcacacgaactcatatgggctgatacgtgggcttcattttgcttct
tttgtggcacagtattatgggttggtattggatcttttaactcttggtttgacccgtgcg
agtgaaattgctggttcaccacagatgactaatgagttcgccactttccaggataccaaa
gttgaaacaagacatccaatacgactgtactcccggtacatcgataaagtgcatatgcta
atccgatttacacacacagaggctcgggatctgattcagcgttttctcacggagcatcct
gatcccaacaatgaaaatatggttggttacaataatagaaaatgctggcccggagatgca
agaatgaggctcatgaaacatgatgttaatcttggaaggagcgttttctgggacttgaag
aattgtcttcctcggagtatcacgaccctggagtggcagaatagctttgtttctgtttat
agcaaagacaatcccaaccttctatttagcatgtgtgggtttgaggtccgtatattgcct
aaagtaagagtaactcaggaggcattcagtaatatgaaagatggaatttggaatctgcag
aatgaaatgacaaaagagcttactgcagttgctttcttacgtgttgacgatgaacaaata
aaagagtttgaaaatcgtgttaggcagattcttatgagttcaggggctacaacattcaca
aaagttgttaacaagtggaatacagctctaataggtttaatgacatacttccgggaagca
actattaacacgcgtgagctattagatctgttggtcaaatgtgaaaacaaagtacaaaca
cgtatcaagattggcctgaactcaaaaatgcctagcaggttcccgcctgtgattttctac
acacctaaggagattggagggcttggcatgttatcaatggctcacatcttgattccacag
agtgatttccgttacaatcggcagacagatgttgggattacacactttaggagtggtatg
agtcacggggcagaccagttgattccaaatctgtctcgttatattcagtcatgggaaagc
gagttcattgattcacaacgtgtttgggcagaatttgctatcaagagacagctagcacag
tccactaacaaacgtttgagcgttgaagactttgatgacacttatgatcgtggaataccg
aggatcaatacgttgttccagaaggatagacatacattagcatatgacaaaggatggagg
gtgaggacagaatttnaacaatatcagattctgaaacaaaatccattctggtggacacac
caaaggcatgatggtaaactttggaacttgaataattacagaaccgatgttattcaagca
cttggtggtgttgagggaattctcgagcatacattgttcaagggaacatatttcccaact
tgggagggtcttttttgggagaaagcttctggttttgaagagtcaatgaagtacaagaag
ctaacaaatgcacaaagatctgggctgaaccagattccaaaccgcaggttcacactttgg
tggtcgcccactattaaccgggcgaatgtttatatcggtttccaagtgcagttagatctg
acaggaatattcatgcacggaaaaataccgaccttaaaaatctctcttattcaaatcttc
cgtgctcacttgtggcagaagattcacgagagtgtggtgatggatctctgccaggtattg
gatcaagagttggatgcattggaaatcgagactgtgcagaaggagacaatccatccaaga
aagagttacaaaatgaacagttcctgtgccgacattcttttatttgttgcacatagatgg
cccatgtcaaaaccaagcctggtagccgagtcaaatgatgtctttgatcagaaagcaagt
aataagtactggattgatgtgcagcttcgttggggtgattatgattctcatgacatcgag
cgctatacaagggccaagttcatggactacactactgataacatgtccatctatccatca
ccaacaggggtgatggttggaatagatctcgcctacaacctgcattcagcttttggtaat
tggttccctggttcaaagccacttttagcccaggccatgaataagattatgaagtcaaat
ccggctctatatgtgttaagggagcgtataaggaaagggctgcagctatactcttcagac
ccaactgaaccatacctgtcatctcagaactatggagaaatcttcagcaaccagcttatg
tggttcgttgatgatacaaatgtgtaccgtgtggaagctcgcaagacttttgaaggaaat
ataacagcaaaaccaatcaatggtgccattttcatatttaatcctcgcacgggtcagcta
tttctgaaggtcattcatacaagcgtgtgggctggtcagaaacgtcgtggtcaactggct
aagtggaaaacagcagaagaagtggctgctcttgttcgttctttacccgttgaggaacaa
ccaaaacaaatcattgtcactcgtaaaggcatgctggatcctcttgaagttcatttactg
gattttcctaatattgtcattaaggggagtgagttacagcttcctttccaagcgtgtcta
aaaattatgaaatttggtgatctgattctgaaagcatccgaaccacaaatggttttgttc
aatatatatgatgattggttgaagagtatatcatcatacacagcttttccgaggcttata
ttgattctgagagctttacatgtgaataatgagaaggcaagaatgttgcttaaacctgac
aagactgttgtcaccgagccgcatcacatctggccgtcccttactgatgatcaatgggtg
aaagttgaagttgctttacaagatctcattttgtctgattattcaaaaaagaatcatgtt
aatacgtcagcactgagacaatccgagatacgtgatattattcttggtgctgaaattact
ccaccttctcagcagaggcaacaaatagttgagatcgagaaacaggcaaaggaaagcagt
caattgacagctgtcaccaccagaactaccaacatccatggcgatgaacttatcgtgacc
accactagtccttttgagcaagctgcatttgcttccaagactgattggcgtatgagggca
atatcagctgcaaaccttcatcaccgtgtgaatcatatatatgtgagctcaaaagactta
aatcagacggggtatacatacgtcatgccaaagaaccttttgaagaaatttatatgcata
gcagatttaagaacacagatttctggctacttatatggggttagtcctcctgataatctt
caagttaaagaaatccgctgcatcgtcatgccaccacaatggggtacacatcaacaagtc
catcttccatcaagtatccctgaacatgacttccttaaagatctggaaccgttgggatgg
atgcacacacaaccaaacgagcttcctcagctctcacctcatgatatttcgtttcatgca
cagattttggaaaataagaagcaatgggacagggagaagtctattattctgacttgtagt
ttcactccaggatcatgctcgttgactgcttataaactaactacagcaggttaccaatgg
ggccgtgcaaataagaatacaggaagcaatccgcatggttatttaccaactcattatgag
aaggtcccattgcttctaagtgaccgtttccttggtttctacatggttcctgatgatggt
ctgtggaattacaattttatgggagtgaagcatacagttagcatgaattatggaataaag
ctcgggaatccacatgaatattatcatgaagatcacaggccgacacattttttggagttt
agcaatttggaagagggtcatagatctgtgggagatcaggaggacacattttcttga
DBGET
integrated database retrieval system
