Erigeron canadensis (horseweed): 122609967
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Entry
122609967 CDS
T07610
Name
(RefSeq) guanine nucleotide exchange factor SPIKE 1
KO
K21852
dedicator of cytokinesis protein 6/7/8
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecad04131
]
122609967
Membrane trafficking [BR:
ecad04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
122609967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHR-2_Lobe_A
DOCK-C2
DHR-2_Lobe_C
DHR-2_Lobe_B
Motif
Other DBs
NCBI-GeneID:
122609967
NCBI-ProteinID:
XP_043638861
LinkDB
All DBs
Position
8:complement(42912918..42926263)
Genome browser
AA seq
1818 aa
AA seq
DB search
MSSNGHCFRRKPRQPVAANLNIDSLLDENLEQWPHLNELVQCYKTDWIKDDNKYGHYESV
GSISFQNQIFEGPDTDIETEMHLANARQDKIEDNTDDDVPSTSGRQLSEHYGESPLPAYE
PVFDWENERSMIFGQRIPESNMPQSMSGLKISVKVLSLSFQAGLVEPFYGTISLYNKERR
EKLSEDFMFRVLPSEMQDASTSSESRGVFYLDAPSSSVCLLIQLEKCATEEGGVTPSVYS
RKEPVHLTEREKQKLQVWSRMMPYRESFSWAIIPLFDSNLGPASGGSASPSSPLAHSLSG
ASLQEGVSEPIAKVTLDSQLGYSSGNSVVVEVSNLNKVKESYTEDSLQDPKRKVHKPVKG
VLRLEIEKLQAPNSEYDNVSDNASTTNELDHGDRLTDSTVSEWRNIHSSRHKEQPLNGSI
ATGHADLTNNDVHAFDFRTTIRNEPFLQLFHCLYVYPLTVHLSRKRNLFIRIELRKDDAD
VRKQSLEAIYSREPGGSLQKWVHTQVAPGSRVASYHDEIKVSLPSMWTPQHHLLFTFFHV
DLQTKLEAPKPVIIGYAALPLSTHAQLRSDINLPIMKELVPHYLQDSGKERLDYLEDGKS
VFRLRLRLCSSLYPISERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKNVDSTALLQFL
HPILNMLLHLIGNGGETLQVAAFRAMVNILTRVQQESVDEAERNIFLVNYVDYAFDDFGG
RQTPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLSMAWFFLELIVKSMALEQTRLLYHNL
PLGEDIPPMQLKEGVFRCIMQLYDCLLTEVHERCKRGLSLAKRLNSSLAFFCYDLLSTIE
PRQVFELVSLYLDKFSGVCQSVLHDCKLTFLQIICDHDLFVEMPGRDPSDRNYLSSVLIQ
ELFLTWDHDDLSQRAKAARILVVLLCKHDFDSRYQKPEDKLYIAQLYFPLVGQMLDEMPV
FYNLNAVEKREVLIVVLQILRNLDDASLVKAWQQNIARTRLFFKLLEDCLILFEHKKSVD
SMLIGGSSRSPVADSPMSAKYSDRLSPAINQYLSEASRQEIRPQGASENGYLWQRVNSQL
SSPSQPFSLREALAQAQSSRIGASSQALRESLHPVLRQKLELWEENLSAAISLQILEITE
KFSKAAASHSIATDYGKLDCITSIFTSIFSRSQSLAFWKSLFPVFNSVFQLHGSTLMARE
NDRFLKQIAFHLLRLAVFRNENVRKRAVIGLQILVRSSFSHFTQTARLRAMLTITLSELM
SDVQVTQMKSDGTLEESGEARRLRKSLEEMADESKSDGLLKECGLPDASLVNALEGSAES
RWSWSEVKFLSNSLLLALDASLEHALLGSLVNTDRYAAAESFYKLAMAFAPVPDLHIMWL
LHLCDAHQEMQSWAEAAQCAVAVAGVVMQALVSRNDGVWSNNHVTALRKICPMVSTEITS
ETSAAEVEGYGASKLTVDSAVKYLQLANKLFSQAELYHFCGSILELVIPVYKSRRSYGQL
AKCHSMLTNIYESILEQESSPIPFTDATYYRVGFYGEKFGKLDKKEYVYREPRDVRLGDI
MEKLSHIYELRMDGNHTLHIIPDSRQVKADELQPGVCYLQITAVDPVMEDEDLGSRRERI
FSLSTGSVRARVFDRFLFDTPFTKNGKTQGGLEDQWKRRTVVQTEGSFPALVNRLLVNKS
ESLEFSPVENAIGMIETRTAALRNELEEPRSSDGDQLPRLQSLQRILQGSVAVQVNSGVL
SVCTAFLSGEPATRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGDEDQDFHTQLVNGF
QSLTAELSHYIPAILSEL
NT seq
5457 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctaatggtcattgttttagaagaaagccacgccaaccagttgctgcgaatttg
aatattgactcattgcttgatgaaaatctagagcaatggcctcatttaaatgaacttgtt
cagtgctacaaaactgactggataaaggatgataacaagtatgggcactatgaaagtgtt
ggtagtatatcctttcagaaccagatatttgaagggcccgatactgatattgaaacagaa
atgcatctcgccaatgctaggcaagataagattgaagacaacactgatgatgatgtaccc
agcacctctggtcgacaactttcggagcattacggtgaatcccccttgcctgcttatgaa
cctgtatttgactgggaaaatgagaggtcaatgatatttggacaaagaattccagaatct
aatatgccacagtctatgagtggattgaagatttctgtaaaagtcctttctctttcattt
caagctggattggtagaaccgttttatggtactatatcattgtataataaagagagaaga
gaaaagctctcggaggacttcatgtttcgtgttcttccatctgaaatgcaggatgctagc
acttcttctgaatcccgtggagttttttatctagatgccccgtcatcatcagtctgcctg
cttatacagttagagaaatgtgctactgaagaaggcggagtgactccatccgtttattca
cgtaaagaacctgtccatctcaccgagagagaaaagcaaaaactacaagtttggtctcgg
atgatgccttacagagaatcattttcatgggcaattattccattatttgatagcaacctt
ggtccagcttctggtggatctgcttcccccagcagtccgctggctcatagtttatcagga
gcaagtttgcaggaaggtgtttctgagcctattgcaaaggtcaccttagatagtcagttg
ggatattcaagtggaaattctgttgtggtggaagtatcgaacctaaataaagttaaagag
agctacaccgaggattctctccaggatcccaaacggaaggtccacaaacccgtgaaaggt
gtcttgcgtttggaaatagaaaagcttcaagctcctaactccgaatatgacaatgtttct
gataatgccagtacaaccaatgaattggaccatggggaccggctaactgattccactgtt
agtgagtggcgcaacattcattcaagtagacataaagaacaaccattgaatggatctatt
gcaacaggacatgcagatttgactaataatgatgttcatgcttttgacttccgtacaaca
ataagaaacgagcctttcttacagctttttcattgtctatatgtctatccattgactgtt
catttgagtaggaaaagaaatttgtttatacgaattgagctcagaaaggatgatgctgat
gttcgaaagcagtcacttgaggcaatatattcaagggagccaggagggtccctacaaaaa
tgggttcacactcaagtagctcctggaagtagggtggctagctatcatgatgagatcaaa
gtttcacttccttctatgtggacaccacaacatcatcttttgttcacatttttccatgtt
gaccttcagacaaagttggaggctccaaaaccagtaataatcggatacgcggctcttcca
ttatcaacacacgcccagttaagatccgacatcaatctaccaatcatgaaagagctggtt
ccacactatcttcaagatagtggcaaggagaggctggattatttggaagacgggaaaagt
gtgtttcgtctacggttacggctttgctcatctttatatcctattagtgagcggatcaga
gattttttccttgaatatgacaggcacactctccgcacaagcccaccttggggttctgaa
ctccttgaggcaatcaacagtttaaaaaatgttgattcgacagctttgctgcagtttctt
cacccaatattgaatatgcttctccatcttattgggaatggtggagaaactctacaggtt
gctgctttcagagccatggttaatattttgacaagagtacaacaagagtcggtggatgaa
gctgaaagaaatatatttttggtcaattatgtggattatgcttttgatgattttggtggc
cggcaaactccagtatatcctggtttgtcaactgtgtggggaagtctggcccgtagcaag
gccaaaggctaccgggttggaccggtatacgatgatgtactgtcgatggcttggttcttc
cttgaattgattgtgaagtccatggcactagagcagactcgactgctatatcataatttg
cctctaggtgaagatattccaccgatgcagttaaaagaaggtgtatttaggtgtatcatg
caattgtatgattgccttttgacggaggtgcatgagcgttgtaaaagggggttaagttta
gcgaaacgtttaaacagcagtctggctttcttttgttatgatcttttgtcaaccatcgag
ccgcgccaagtttttgaactggtgtcattgtacctagataagttttctggggtatgtcaa
tcagtgttacatgattgcaagcttacctttctgcaaatcatctgtgaccacgatctattt
gttgagatgccagggcgggatccgtctgataggaactacctatcatctgttttaattcaa
gaactttttctcacatgggaccacgatgatttgtctcaacgggcaaaagcggctaggatt
ttggtagtcctcttatgcaagcatgattttgattctcgctaccaaaagccggaggataag
ttatatattgctcaattgtattttccactagtgggacagatgctggatgaaatgcctgta
ttttataacctgaatgctgttgaaaaacgtgaagtgttgattgtagttctacaaatatta
cgtaatctggatgatgcatcacttgtgaaggcttggcagcagaatattgctcgaacaaga
cttttttttaaactactggaggattgccttattctttttgaacacaaaaaaagtgttgat
agcatgcttataggcggcagttctcggagcccagtagctgattcacctatgtctgcaaag
tactctgataggctttctcctgccattaatcagtatctatctgaggcatctcgtcaagaa
attcggccacaaggtgcatctgagaatggatatctatggcaaagagtgaactcccaattg
agctctccgagccagccgttttccttaagggaagctcttgctcaggcacagtcttccaga
attggcgcttcaagccaagcactgagggaatcactgcatccagttttgaggcaaaaactt
gaactttgggaagaaaacctaagtgctgctatcagtctccaaattttggaaattacagaa
aaattctctaaggctgctgcatcacatagtattgcaactgattatggaaagttggattgc
attacatccatatttaccagtatcttctcacgcagtcaatcacttgccttctggaaatcg
ctatttccagtattcaatagtgtatttcagcttcacggatcaacactaatggcaagggaa
aacgaccgtttcttaaaacaaattgcttttcatcttcttagacttgctgttttccgtaat
gaaaatgtcagaaaaagggctgtcattggtttgcaaatccttgtcaggagttctttctcc
cactttacacaaacggcaaggctaagggccatgcttacaattacattgtcagaactgatg
tctgatgttcaagtgactcaaatgaagtctgatggaacacttgaagaaagtggtgaagca
cgtcgtcttagaaaatcattagaagaaatggcagatgaaagcaagagtgatggtttacta
aaggaatgtgggcttccagatgcatcgcttgttaacgcactcgaagggtccgcagaaagt
cggtggtcatggtcagaagtgaagtttctatctaatagtctccttttggctcttgatgct
agcttggaacatgcacttttgggatcacttgtgaacacagatagatatgcagctgccgaa
agtttttataaacttgcaatggcatttgctccggtgccagatctccatataatgtggtta
ttacatctatgtgatgctcatcaggagatgcaatcatgggctgaagcggcacagtgtgct
gttgcagttgctggcgttgtaatgcaggctcttgttagcagaaatgatggagtctggagc
aataatcacgtgactgccttacgcaaaatatgtccgatggttagcactgagatcacatct
gagacctctgcggcagaagttgaaggatatggtgcttcaaaactaactgttgattctgct
gtaaagtacttgcagctagcaaataaacttttctctcaagctgaactatatcatttttgt
ggaagcattttagaactcgtaattccagtttataagagcagaagatcttatggacaacta
gccaaatgccacagtatgctaacaaatatttatgaatcaatcctagaacaagaatctagt
ccaataccatttacagatgcaacatattatcgagttggattttatggtgaaaagttcggg
aaacttgataaaaaagaatatgtgtaccgagagccccgtgacgtaagattaggtgacata
atggaaaaacttagtcatatatatgagttgagaatggacggtaatcatacattacacata
attcctgattccagacaagtaaaagctgatgagctgcagcccggtgtatgctatttgcaa
atcacagctgtagatccggtgatggaagatgaggatcttggaagcaggagggagaggatt
ttttctctttctactggatcagttcgtgcacgtgtgtttgatcggttcttgtttgatact
ccttttaccaaaaatggtaagacgcaaggtgggctggaagaccaatggaaacgacggact
gtggttcaaactgaaggctcatttccggctttagttaacaggcttttggttaataaatct
gagtcgcttgagttttctcctgtcgagaatgctattggtatgattgaaactagaacagct
gcattaaggaatgaacttgaggagccacgtagctctgacggtgatcagcttccacgactc
cagagtttgcagaggatacttcaaggatccgttgcagttcaagtgaacagtggagtactg
agtgtctgcacagctttcttatcgggtgaaccagcgacaagacttcgatcacaagaattg
cagcaactcattgctgctcttcttgaattcatggctgtgtgcaagcgtgctatacgcgta
cattttagactcattggtgatgaagaccaggatttccacacacaattggtcaatgggttt
cagtcactcacagctgagttgtcccattacatcccagcaattctttctgagctttaa
DBGET
integrated database retrieval system
