Erigeron canadensis (horseweed): 122610003
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Entry
122610003 CDS
T07610
Name
(RefSeq) ubiquitin receptor RAD23d-like
KO
K10839
UV excision repair protein RAD23
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03420
Nucleotide excision repair
ecad04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122610003
09124 Replication and repair
03420 Nucleotide excision repair
122610003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
ecad03051
]
122610003
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122610003
Proteasome [BR:
ecad03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
122610003
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
122610003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
Rad60-SLD
UBA_7
Rad60-SLD_2
UBA_RAD5A
CUE
Dsc3_N
TECR_N
Ubiquitin_4
UBA_3
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
122610003
NCBI-ProteinID:
XP_043638904
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Position
8:complement(38866477..38872633)
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AA seq
387 aa
AA seq
DB search
MKVFVKTLKGTHFEIEVKPEDTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDPTTLE
ENKVAESSFIVIMLSKTKAPAGESSTAAAAPQAPQTSATPPAPAATQAPPPAATQPASVP
LATPASDPASIANAPPENVYDQAASNLVAGSNLEGTIQHLIDMGGGIWDRDTVVRALRAA
YNNPERAVEYLYSGIPEPADLPPAAGVSPVPGVQAVNPPAQPPQATQPAAAPATGPNANP
LDLFPQGLPDMGTNAPGGAAGNLDFLRNSPQFQALRAMVQANPQILQPMLQELGKQNPHL
VRLIQEHQADFLRLINEPVEGGENVLGDLAGGMPQAVTVTVEERQAIERLEAMGFDRALV
LEVFFACNKNEELAANYLLDHMHEFED
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtttttgtcaaaacattgaagggaacgcacttcgaaatcgaagttaaacccgaa
gatacggttgctgatgtgaagaaaaatatagaaactgtccagggagcagatgtttatcct
gctgcacagcaaatgcttatccatcaggggaaagtgcttaaagatcccaccaccttggag
gagaacaaagttgccgaaagctcttttattgtcattatgttatctaagactaaggcacct
gccggtgaatcttcaactgccgcagctgccccacaggcacctcaaacaagtgccactccc
ccagcaccagctgctacccaggctcctcctccagctgctacacagcctgcatctgttccc
ctagctacaccggcttcggacccagcatccattgcgaatgccccgccagagaatgtatat
gatcaagcagcatcaaacctggttgcaggtagcaatttagagggtacaattcagcatctt
attgatatgggtggggggatttgggacagggatacagttgttcgtgctcttcgtgctgcc
tacaacaatccagaaagagccgtggagtatctgtattctggtattcctgagccagctgat
cttccaccagcagcaggagtttcacctgtgccaggtgtgcaggcagtaaacccccctgcc
cagcccccacaagctacacaaccagcagctgcccctgcaactggaccaaatgcaaatccc
ttggatctctttccacagggtcttcctgacatgggtacaaatgctcctggcggtgctgca
ggcaaccttgattttctccgtaacagtccacagttccaagcacttagagccatggtgcag
gctaatccacaaatattgcagcctatgcttcaagagttggggaagcaaaatcctcacttg
gtgagactcattcaagagcatcaggctgatttccttcgcttgatcaatgaacctgttgaa
gggggagagaacgtacttggagatcttgccggaggaatgccacaggccgtgaccgtgaca
gttgaggaacgtcaggccattgaacgtctagaagcaatgggattcgatagagcactagta
ttagaggtcttcttcgcatgtaacaagaacgaggagcttgcagctaattatctattagac
cacatgcacgaattcgaagactag
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