Erigeron canadensis (horseweed): 122610006
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Entry
122610006 CDS
T07610
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122610006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122610006
03009 Ribosome biogenesis [BR:
ecad03009
]
122610006
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122610006
Spliceosome [BR:
ecad03041
]
Complex A
U1 snRNP components
U1 related factors
122610006
Complex B
122610006
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
Pre-60S particles
Helicases
122610006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Transformer
Motif
Other DBs
NCBI-GeneID:
122610006
NCBI-ProteinID:
XP_043638907
LinkDB
All DBs
Position
8:complement(24660456..24667411)
Genome browser
AA seq
1011 aa
AA seq
DB search
MAAEGATDAMGPRYAPPDPTLPEPWKGLIDGSTGVMYYWNPETNVTQYEKPAAVAPPIPS
GPPPVPSVPKPASVPNTRVEQPNGIPGQQTHQMFSSQEQQMPPQQGNNMPQSYQGYNMEQ
QGYQYPHQQMPYMGYQPNMPQQRPPSDVNLNPVQTSHIGGPPGKAPLYGGPQFSMQQPPT
SFGQMQQGGIDYQQHGPKFQNQMGQPLIHGQQPNVQSVGSKMGFEDNPPGRVGNDHYYNA
KNGGPGPSPGMVPHQPKLAAIPMARTQPEMKSGGPPLQNASSSLHGGPPSHNMYGQPMGG
PPYMNNAMMRPNPAVMASPDNLSSVDMYRQKHDVTTTGDNVPAPFMTFESTGFPPELLRE
IYAAGFASPTPIQAQTWPIAMQNRDIVAIAKTGSGKTLGYLIPAFMLLRSCRHNPLNGPT
VVVLAPTRELATQIQDEAIKFGRSIRISCTCLYGGAPKGPQLKELERGADIVVATPGRLN
DILDMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMFTATWPKEVRKI
AGDLLVSPAQVNIGNSDELAANKSITQYVEVVPHLEKQRRVEQILRSEERGSKIIIFCST
KKLCDQLTRSIGRNFGAAAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDVKDVR
VVINYDFPNGVEDYVHRIGRTGRAGAKGVAYTFFSEQDWKHAPDLIKVLEGANQIVPNEV
REIATRGGPGFGKDRGGINRFDSGGSGGRWDSGGGRGSSRDGGFRGRGIDSRDGVFGGRG
GPGGVDMRDGRFGGRGDPRDGGFGSGFGGRGAPRDEGFGGRGGPRDGGFGGRGMRDGGGF
GNRGGRDGNFGGRGGPRGVGFGGPDGGWDRNERFMDSRGAGRGRGRGRFDNRRDTDRSRG
RSYSRSRSRSRSRSRSWSRSRSRSWSRSRSPRRSRSRSRSRTPVRRVRRRESKFDQKEAD
LPVVGVPPLKSEPGMSLMSPGMQKDIAFSGPDSSVNPSLPPPESVNQITES
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgagggagctaccgatgctatgggtccgcgttatgccccacctgatcctact
ttgcctgaaccctggaagggtttaattgatggaagcacgggtgtaatgtactattggaac
ccggaaactaatgtcactcagtatgagaagcctgctgctgtggcacctccaattccatcg
ggtccacctcctgtaccttctgtacctaaacccgcatctgtaccaaatacaagggtagaa
cagcctaacggtattcctggtcaacaaacacatcaaatgttctcgtcccaagaacaacaa
atgccgcctcaacaaggaaataacatgccccagtcataccagggttataatatggagcaa
caaggctaccagtatccacatcaacagatgccgtacatgggctatcagccaaacatgcct
caacagagaccgccttcagatgttaatctgaatcccgttcagacgtcacatataggtggt
ccacctggtaaagctccactatacggtggccctcagttcagcatgcaacaacctcctacg
tcttttggtcaaatgcagcagggtggtatagattatcagcaacatggaccaaagttccag
aatcaaatgggtcaacctttgatacacggtcagcagccaaatgttcaatcagttggatca
aaaatgggatttgaagataatccacctggaagagttgggaatgatcattattataatgct
aaaaatggtggtcctggccccagccccggtatggtccctcatcaacctaagcttgcagcc
attccaatggcaagaacccagccggagatgaaatctggcggtcctccacttcaaaatgct
tcttctagtctccatgggggacccccatcacataacatgtatggacaacctatgggtggc
ccaccatatatgaacaatgctatgatgaggccaaatccagcagttatggcctctccagat
aatctatcatctgtagacatgtaccgtcagaaacatgatgtaacaacaacgggtgataat
gttcctgctccgttcatgacatttgagtctactggattccccccagaattattgagagag
atatacgctgctggttttgcgtctccaacacctattcaggcgcaaacatggcctattgcc
atgcaaaacagagacatagtggcaattgcgaagacaggttctggtaaaacattaggatat
ctgattccagctttcatgctgctcagaagctgtcgccacaatcctctgaatggacctaca
gtagttgttttagctcccaccagagaacttgctacacaaatacaagatgaagctatcaag
tttggccgatccattagaatctcttgcacatgtttgtatggtggcgcacctaagggccca
caattgaaggaattggaacgaggggcggatattgttgtagctactcccgggcggcttaat
gatatccttgatatgaagaagattgactttcgtcaagtttctcttcttgtgcttgatgag
gctgataggatgcttgatatggggtttgaacctcaaataaggaagattgtcaatgaaata
cctcctcgcaggcaaactctgatgtttactgcgacttggcccaaagaagttaggaaaata
gctggtgatcttcttgtaagtccagcccaagtcaatattggcaattcagatgagcttgct
gcaaacaagtctattacacagtatgtggaagtggttcctcatttggagaagcaaaggcgt
gtggagcagattctgagatctgaagagcggggctctaaaatcattattttctgttcaaca
aaaaaattatgtgatcagcttacacgtagtattggtcgtaattttggagctgcagccatt
catggagataaatctcagggtgagagagactgggttttgaatcaattccgctctggaaag
tctccgatattagttgctacagatgttgctgcacgaggccttgatgttaaggacgtgaga
gtggtgattaactatgattttccaaatggtgtggaggactatgtacatagaatcggtcgg
accgggagggcaggggctaaaggggttgcttacaccttcttttctgaacaggactggaaa
catgcacctgatctaattaaagttcttgagggagccaatcagattgtacccaatgaggtg
cgggaaattgccacgcgtggtgggccaggttttggcaaggacagggggggaataaaccgc
tttgattctggtggtagtggtggccgttgggattctggtggtggccgtggtagcagtaga
gatggtggttttaggggtcgtggtatcgactcaagggatggagtctttggtggccgtggt
ggtcccggtggagttgacatgagagatggaagatttggtggacgtggtgacccaagggac
ggtggttttggtagtggctttgggggaagaggtgctccaagggatgaaggttttggaggt
cgtggtggccccagggatggtggttttggtggtcgtggaatgagagatggcggtggcttt
ggtaaccgtggagggagagatggaaattttggtggtcgtggtggtcccagaggtgttgga
tttggtggtccagatggtggctgggataggaatgagagattcatggattctcgtggcgct
ggtcgtgggcgtggccggggacgatttgataacagaagagatactgatcgtagcaggggt
agaagttatagtcgaagccgtagccgtagccgtagccgcagccgtagctggagtcgcagt
aggagccgtagttggtcacgcagccgtagccctaggcgtagccgaagtcgcagccgcagc
cgcactcctgtaaggcgtgtgaggcgccgtgagtccaaatttgatcagaaagaagctgat
ttgcctgtagttggtgtcccccctctaaaatctgaaccggggatgtctcttatgtctcca
ggcatgcaaaaagacattgccttctcagggcccgacagtagtgtcaatccatctttgccg
cctccggaatctgtcaatcaaattactgaatcctaa
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