Erigeron canadensis (horseweed): 122610322
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Entry
122610322 CDS
T07610
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
ecad03015
mRNA surveillance pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122610322
09122 Translation
03013 Nucleocytoplasmic transport
122610322
03015 mRNA surveillance pathway
122610322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122610322
03041 Spliceosome [BR:
ecad03041
]
122610322
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122610322
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122610322
Spliceosome [BR:
ecad03041
]
Complex C
Other components
EJC/TREX
122610322
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122610322
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
122610322
NCBI-ProteinID:
XP_043639251
LinkDB
All DBs
Position
8:22835014..22840105
Genome browser
AA seq
430 aa
AA seq
DB search
MADTEIKDNDAYEEELLDYDEEDDKAPDSVGVKVNGESVKKGYVGIHSSGFRDFLLKPEL
LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPAPGQVAA
LVLCHTRELAYQICHEFERFSTYLTDIKVAVFYGGVNIKVHKELLKNECPHIVVGTPGRI
LALARDKDLALKSVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR
PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKS
VSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERV
NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASAGDSEVLNQVQERFEVDIKELPE
QIDTSLYMPS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggcggatacagaaatcaaggataatgatgcttatgaagaagagcttcttgattatgat
gaagaagacgataaagcccctgattccgtcggtgttaaagtcaacggcgaatccgttaag
aagggctatgtaggaattcacagttccggattcagagattttcttttgaagccagagttg
ctccgtgctattgtggattcaggatttgaacatccttcagaagtgcaacacgagtgcatt
cctcaagctatcttgggaatggatgttatttgtcaagcaaagtctggtatgggcaagact
gccgtctttgttttgtcgacgttgcagcaaattgagcctgcgcctggtcaagttgctgcc
cttgttttatgtcatacaagagaattggcttaccagatctgtcatgagtttgaaagattc
agcacctacttaaccgacatcaaagttgcggtcttctatggtggtgtcaacatcaaagtt
cacaaggagcttttaaagaatgaatgccctcatatagttgttgggacgccgggaaggatt
cttgcacttgccagagacaaagatcttgcattgaagagtgtgaggcattttatactcgat
gagtgtgataagatgctcgagtcactcgacatgaggagagatgtgcaagaaattttcaag
atgactcctcatgataaacaagtaatgatgttttcggcaacgttgagcaaggaaattcgt
ccagtctgcaaaaagtttatgcaagatccaatggaaatttatgtggatgacgaagccaag
ttgaccctacatggtcttgtacagcactacatcaaattgagtgagctggagaagaatcgg
aaactaaatgatctgcttgatgcactagatttcaatcaagtcgtcatctttgtcaaaagt
gtaagcagggcagctgagctgaacaagttgcttgttgagtgtaattttccttcaatctgc
atccactctggcatgtctcaggaagaaaggctgacacgctacaaaggtttcaaggagggg
cacaagagaatcttggtggcaacagatttagttggcagaggcattgatattgaacgagtg
aacattgtcatcaactatgatatgccagactctgctgacacttatctccaccgtgtcggt
agagctggaaggtttggaaccaaaggtcttgcaataacatttgtggcttctgcaggcgac
tcagaagttcttaatcaggttcaggagagatttgaggttgatattaaagagcttcctgag
cagatcgatacttcattatatatgccgtcttag
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