Erigeron canadensis (horseweed): 122610834
Help
Entry
122610834 CDS
T07610
Name
(RefSeq) pectate lyase 1-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122610834
Enzymes [BR:
ecad01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122610834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122610834
NCBI-ProteinID:
XP_043639727
LinkDB
All DBs
Position
8:complement(40219151..40220483)
Genome browser
AA seq
366 aa
AA seq
DB search
MSGSNSSRRALTACEANNLIDKCWRCKPDWDHNRQALADCAQGYAKGTTGGKGGEIYKVT
DPTDEDAANPKEGTLRFGITQNKPLWIIFEKDMVITLTHELVVQSDKTIDGRGAKVEITG
AGFTLYEVKNVIIHGICIHDTKETPGGMIKNSDGPPGLRQKSDGDGICVTGSSKIWIDHC
ELSKGVDGLIDVTLGSTAVTISNCKFTNHHKLILLGADDGHHHDKNMLATVAFNWFAEGC
DQRMPRCRFGFFQVVNNNYDGWGTYAIGGSSAPTILSQGNRFKAPDDAAKKNVVVRADAP
ESESMQWNWRTEKDVLENGAIFTPSGSDPQMTSEQQNCLIPAEPGESAQKLTSAAGVLSC
TPGSPC
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggatcaaattcatcaaggagggccttaaccgcatgtgaagcaaataacttaata
gacaagtgctggaggtgcaaacccgattgggatcacaaccgtcaagcattagctgattgt
gcacaaggatacgcgaaaggaaccactggtggcaagggtggggaaatatacaaggtgaca
gatccaacagatgaagatgccgcaaatccaaaggaagggacgctccggtttggcattact
caaaacaagcctttatggatcatttttgaaaaagatatggtcatcactttgacacatgag
cttgtagtgcaaagcgacaagactatcgatggaaggggtgcaaaagttgagatcactgga
gccggtttcaccctttatgaagttaaaaatgttatcattcatgggatttgtatccatgat
actaaagaaacccctggtggtatgattaagaattcagacggcccaccaggcttgagacaa
aagagcgacggtgatggtatttgcgttactggttcgtccaagatatggatcgatcattgt
gaactcagtaagggtgtagacgggctcattgatgtcaccttaggtagcacagccgtaacc
atttctaattgcaaattcaccaatcaccataagcttatattgctcggggcagacgatgga
catcatcacgataaaaatatgttagcaactgtcgcatttaattggtttgctgaaggatgt
gatcaaaggatgcctagatgtcgatttgggtttttccaagtcgttaacaataactacgat
ggatggggaacatacgccataggtggtagctcggctccaactatcctcagtcagggtaat
agattcaaggctcccgacgatgcagccaagaaaaatgtggtggtgagggctgatgcacca
gagtcagagtccatgcaatggaattggagaacagagaaggatgttctggagaatggagct
atatttacaccatctgggtcggatccacagatgacctccgagcaacagaattgcttgatt
cctgctgagccaggagagtctgctcaaaaactcactagtgctgctggtgtactctcatgt
acccctggatcaccttgttaa
DBGET
integrated database retrieval system
