Erigeron canadensis (horseweed): 122611074
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Entry
122611074 CDS
T07610
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122611074
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ecad01002
]
122611074
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122611074
03036 Chromosome and associated proteins [BR:
ecad03036
]
122611074
Peptidases and inhibitors [BR:
ecad01002
]
Metallo peptidases
Family M1
122611074
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122611074
Coactivators
SAGA/TFTC/STAGA complex
122611074
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
122611074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
HEAT_2
Peptidase_M1_N
Motif
Other DBs
NCBI-GeneID:
122611074
NCBI-ProteinID:
XP_043639967
LinkDB
All DBs
Position
8:31555410..31567586
Genome browser
AA seq
1440 aa
AA seq
DB search
MAKPKKQKNEEQKSDNNNNNNSEAVVKHQKLCLSIDIEKRRIYGYTELEVVVPENGIVGL
HADNLMIENVMVDGEPARFEIFPHYHETDRDRWCSLSSANSAADAAGLVYFTNLEREPVP
NLLIMCSNEIQKPVAELPDQTVQENGTQTANEPKQNVKMIHIDYWVEKIETGIHIDRDVM
HTNNQIRRARCWFPCMDDNSQRCCFDLEFTVASNLVAASTGTLMYQVLTNDVPPRKTYVY
KLSVPVAAQWISLAVASFEIVPDRYKNLVTHMCLPADLQKLGNTVGFLHTAYSHYEHYLS
SEFPFGSYTQVFIDPEMAVSSLSLGASMNIFSSQILFDKKIINQTIDTRVKLAYGLARQW
FGVYITAETPNDEWLLEGLAGFLTDSFIKQFLGNNEARYRRYKANCAVCKADDSAATALS
SSDASKALYGTQSIGFYGKIRSCKSVAVLQMLEKQMGPESFCKVLKNLVAPPKDATRPLR
TLSTREFRHLANEVGNLESPFLREFFSRWVGSSGCPVLKMGFSYNKRKNLVELAALRGCT
ATPDSNSSISNAKPDFVKREIDVGWPGVMSIRVHELDGMYDHPVLPMAGETWQLLEIQCH
SKLAAKRFQKPKKGSKHDGSDDNVDTITFVDMRSSIDSPLQWLRADPEMEYLAEIHFNQP
VQMWINQLERDKDVIAQAQAISALELFPRLLSIVNALSSLLCDSQAFWRVRIEAAFALAS
TACEETDWAGLLHLIKFYKSRRYDDKIGLPKPNNFHDFAEYFVLEAIPHAVALVRTADKK
SPREAVEFILQLLKYNENNGNRYSDVFWLAALVQSVGELEFGQQSISFLSSLVKHIDRLL
QFDRLMPSYNGILTVSCIRTLTQIALKLSEFIPLDCIIDLIKPFCSSKLQWQVRIEAFRS
LLDLEYHCKGIDAVLILFIKYLEEETSFRGQVKLGVHAMRLCQISGDSDDDHGVVRETLV
ALLRLLESPAAFNNVTLRHYLFSILQVLAGRPPTLCGVRRDETMVKSHTEYCNKLRSFFV
DIVNQSKPSEPSFDTLMHDGLVLGPNVEPNMVSVTDNERIQSEELTLGVPDAPKEDNDSD
SREQRQPDMVILDSSVANKEPDMVILDSSAAPKEPDMVILDTLVAPKEPDVVILDSLATL
KEPDTVSNSQERKKTVLKIKVKQSSASSRAEEADNAVFERSQGAHNGIDHGTSSSVSMDA
LPHRNFAEPTNVSNQNLDDVNSCHDLGSRVTASIGSVKHDDGDGKALLKELQCTADSSKV
QFNDMDILNHNKLISLHTLNEVKDVLKIKLKHSSVTSKADEANNAVFERSQGAHNSDHGI
DNVSLVRHPEKHVSGSKEKKDKKKKDKEKKRKKKDKDDPEYLERKRLKKEKKRKEKEVAK
HMDTSSIAAKHQERTVAIKDEVPVVQVTSVPKPVDNVTKRPEVTTNKLKIKIKTRTLTGP
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacctaaaaaacagaaaaacgaagaacagaaaagcgataataataacaataat
aattcagaagctgtggttaaacatcagaagctctgcctttcaatcgatatagaaaagcgt
cgtatatacgggtatactgagctcgaagtagttgtaccagagaatggtattgtaggatta
catgctgataatttgatgatcgagaatgtcatggtggatggagagccagcaaggtttgaa
atattcccacactaccacgaaacggatagggacagatggtgctctctttcttcagctaac
tctgctgctgatgctgcgggtttagtttattttacaaatcttgaaagagaaccggtgcct
aatttgttgataatgtgttcgaatgagattcagaaaccagtggcagagctgccagatcag
acggtgcaagaaaatgggacacaaacagcgaatgaacccaagcagaatgtgaaaatgatc
catattgactactgggtggagaagatagaaacaggaatacatattgatagagatgttatg
cacacaaataaccagataagacgtgctcgttgttggtttccttgcatggatgataattca
cagcgttgttgctttgacttggagttcacggtggctagcaaccttgttgccgctagcact
ggcaccttgatgtatcaggttttgaccaatgatgttcctccacgtaaaacatacgtctat
aaattgagtgtacctgttgcggctcagtggatatctctggctgttgcttcatttgaaatc
gttcctgatcgttataaaaatcttgtaacacacatgtgtttaccagctgacttacaaaag
cttggaaacactgtgggatttctccataccgcatatagccattatgagcattatctttcc
tccgaatttccatttgggtcatacacacaagtttttattgatccagaaatggcagtatct
tctttaagcctgggtgcatcaatgaatatctttagctcacaaatcctctttgacaagaag
attattaatcaaacgatagatacaagagtaaaacttgcgtatggtcttgcaaggcaatgg
tttggagtgtatatcactgcagagacaccaaatgatgagtggttattggagggactcgct
gggttcttgacagactcattcattaagcaatttcttggaaacaatgaagcacgctacagg
cgttacaaggcaaattgtgctgtctgcaaagcagatgatagtgctgcaactgccttgagt
tcatctgatgcttccaaggctctgtatggaacacagagcattggtttttatgggaaaatc
cggtcttgtaaatctgtggcagttctgcaaatgttggaaaagcagatgggccctgagtca
ttttgtaaagttttaaagaatctggtcgcacctcctaaagatgcaactcgccctttgagg
actcttagcacaagagagtttcgccacttggctaatgaagttggaaatcttgagagtcca
tttcttagagagtttttttctcgttgggtgggttctagcggttgccctgtcctgaagatg
ggattttcatataacaaacggaaaaacctagtcgaattagcagcactgcggggatgtaca
gccacaccagattcaaattcctcaatttccaatgctaaaccggattttgtaaagcgggaa
atagacgtcggctggcctggagtgatgagtatacgggttcatgaacttgatggaatgtat
gaccatcccgttttaccaatggcgggagaaacatggcagctgctagaaatacaatgccat
tcaaaacttgcagctaaacgattccaaaagccaaagaaagggtcgaagcatgacgggtct
gatgataatgtagacacaatcacgtttgtagatatgcgttccagcattgactcccccctg
caatggctcagggcagaccctgaaatggagtatcttgctgagattcattttaaccaacct
gtacagatgtggataaatcaattggagagggataaggatgttattgcccaagcacaagca
atctcagcactagagttgtttcctcgacttctctctatcgtcaatgctttaagcagtctt
ctttgtgattctcaggcattttggagggttcgtattgaggcggcttttgccttggctagc
acagcatgcgaggaaactgattgggctggtttactgcatctaattaaattttataaaagt
cgtagatacgatgacaagattggactcccaaagccgaataactttcatgattttgcagag
tattttgtacttgaggctattccacatgctgttgctctggttagaacagcagataagaag
agccctagggaagccgttgagttcattttacaacttttaaagtacaatgaaaacaatgga
aatcgatactctgatgttttttggcttgctgccttagtccagtcagttggtgaacttgaa
tttggccaacagagcatttcttttctatcatctcttgtgaaacacattgaccggctattg
cagtttgacaggttaatgccaagctacaatggaatcctgacagttagctgtatccgaaca
ttgacacaaattgctttaaagctttcagaattcattcctttggattgcataattgatctg
atcaaacccttctgctcttctaagttacaatggcaagtgcgaattgaagccttccggtcg
ctacttgatcttgaatatcattgcaaagggattgatgcagtcttaattttgtttattaaa
tatctggaggaggaaacttcattcagagggcaagtgaagttgggggtgcatgctatgcga
ttatgtcaaataagtggtgattctgatgatgaccatggtgtggtgcgcgaaactctcgtg
gcattacttcgcctgctcgagagcccagcagcatttaataatgttacacttcggcattat
ttgttcagcatattacaagtactggcaggaagacctccaacactttgtggagttcggaga
gatgaaacaatggtcaaaagccacacagagtattgcaataaacttagaagcttttttgtt
gacattgttaaccagtctaaaccttcagaaccttcttttgatactcttatgcatgatggt
ttggtcctcgggccaaacgtggagccaaatatggtttctgttactgataatgaaagaatc
cagtcagaggagttgaccttgggtgtacctgatgcaccaaaagaagacaatgattctgac
tctcgtgaacaaagacaaccagatatggtcattcttgattcttcagtagctaataaagaa
ccagatatggttattcttgattcttcagcagctccgaaagaaccagatatggtcattctt
gacactttagtagctcctaaggaaccagatgtggtcattcttgattctttagcaactctt
aaagaaccagatacagtttcaaatagtcaagaacgaaaaaaaactgttctaaaaattaaa
gtgaagcaatcttctgcatcaagtagagccgaagaagctgataatgctgtattcgagaga
tctcaaggtgcccataatggtattgatcatggaacgagtagttctgtgtccatggatgca
ctaccacacagaaattttgctgaacctacaaatgtcagtaatcaaaaccttgatgatgtt
aactcgtgccatgatcttgggtcacgtgtgactgccagtattggcagtgttaaacatgat
gatggtgatggtaaagcacttttgaaagagcttcagtgtactgccgattcaagcaaggtt
caatttaatgatatggacattctgaatcataacaagctcattagtcttcatacccttaat
gaagttaaagacgtgctgaaaatcaagttgaaacattcttctgtaaccagtaaagccgac
gaagctaataatgctgtttttgagaggtctcaaggtgcccataacagtgatcatggaatt
gataatgtgtcattggttaggcatccggaaaaacatgtttcaggaagtaaagagaagaag
gacaagaaaaagaaggataaggaaaagaaacgcaaaaagaaagataaagatgatccagag
tacttggagcgtaaacggttgaagaaagaaaagaagcgaaaggaaaaggaagtggcaaag
catatggacacatcttcaatagctgcaaaacatcaagaaagaaccgtagctatcaaagat
gaggtgccggtagttcaagtgacaagtgtccccaagccagtagataatgtgacgaagagg
cccgaagttacaactaataagcttaaaattaaaattaaaacccgaactttgactggaccg
taa
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