Erigeron canadensis (horseweed): 122611081
Help
Entry
122611081 CDS
T07610
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122611081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122611081
03012 Translation factors [BR:
ecad03012
]
122611081
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122611081
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122611081
Translation factors [BR:
ecad03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122611081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
HA2_C
Ank_2
ATPase
HA2_N
nSTAND3
Ank_5
AAA_19
Ank
AAA_22
ResIII
NPHP3_N
AAA_7
PhoH
AAA_23
ABC_tran
Ank_3
Rad17
Sigma54_activat
CM_2
AAA_16
Motif
Other DBs
NCBI-GeneID:
122611081
NCBI-ProteinID:
XP_043639978
LinkDB
All DBs
Position
8:42807009..42813166
Genome browser
AA seq
1136 aa
AA seq
DB search
MCGTMGLKSKSSGSELGGNRRISVYKSKKKSNSMKKEEALTCFAFSYEGKIVLQDYFTLY
PPGNQEGEQKTATLSSKNIGRTRKKADDIFSKPDMKKPEIAKKLESVAAKMKSDPVLKQI
TESRSKLPITSFKDVIASTIESNQVVLISGETGCGKTTQVPQYLLDHMWSKGEACKIVCT
QPRRISAISVAERISTERGEHIGESVGYKIRMDTKGGRRSSIVFCTNGVLLRVLVTAGNG
RFRYEASSKMAKDAFPDITHIIVDEIHERDRFSDFMLTIIRDMLPLYPHLRVVLMSATLD
AERFSQYFGGCPIIRVPGFTYDVKRLYLEDVLLLVKSESNKVSHLDCTPKTNFDVNSELT
EDYRLALDEAINIAWSNDEMDSLLDFVSTGRGLNFQQSMTGVTPLMVFARKGRVGDMCML
LSFGANCHLQDKQGNTALAWAEHENQKEASEILRKHLNTTLVDPAEEKKLLDRYLQDVNP
ELIDVILIEELLRKICTESKEGAILVFLPGWDDINRARDILSSSNLFKDSSKFLILALHS
MVPAAEQKKVFKRPPQGRRKIILSTNMAETAVTIDDVVFVIDTGRMKEKSYDPYNKVSTL
QSSWISKASEKQREGRAGRCQPGICYHLYSKLRAASLPEFQVPEIKRTPIEELCLQVKLL
DPSCKIEDFLKKTLDPPVSEAIHNAVTVLKDIGALSPNEELTELGEKLGWMPVHPLTSKM
LLFAISVGCLDPALTLACASDYRDPFTLSMFPNDKRKATTAKSELASLYGGHGDQLAVIA
AFDCWKGAKQMGVEARFCSQYFVSKGVMNMLSGMRAQLQNELHRNGFIPDSLSSFSENAQ
DIGIIHAVLVAGLYPRVGRILPPRKNTQRLVIENANSEKIRIHPQSVNSKFSFRNQNVSP
LVIYDEITRGDGGLNIRNCSVIGPLPILLLATEIAVAPTDDGSEDDSETVYEDSDEEEDN
EDETRMRHDDRIMSSPENVVKVIADRWLSFETTALDAAQIYCLRERLSAAIMFKITHPGK
DLPEILAASLRAIAKVLSYDGLSGIYTPLESVDSLTSMVKDTDIGQPVRSSNNFLKSLLS
YGSQQYSQKRRGDAVQFKHHAHPSNSGPPNQHKNQALNGSSAPRLDSLKRQRGNKA
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgtgcggaacaatgggtttgaagtcaaaaagttccgggtctgaattaggaggtaatagg
cgcatatcagtgtacaagtccaaaaagaagtccaacagtatgaaaaaggaggaggctctc
acttgttttgctttttcatatgaggggaagatagtcttgcaagactattttactctgtat
ccacctggtaatcaagagggggaacaaaagaccgcaaccttgtctagcaagaatatcggt
aggacacgaaagaaggcagacgatattttttccaaacctgatatgaaaaagcctgaaatt
gcaaagaagcttgaatctgttgctgccaaaatgaaatcggaccccgtgttgaaacagata
actgaaagtaggtccaaacttccaattacatcctttaaggacgttattgcatcaacaata
gaatccaatcaggtagtccttatatctggtgaaactggatgtgggaagaccacacaggtg
cctcaatatttgttggatcatatgtggagtaagggtgaagcatgtaaaatagtctgcacc
cagcctcgacgaatctccgcaatctcagttgccgaaagaatatctactgaaagaggtgaa
catatcggagagagtgttgggtacaagataaggatggacaccaaaggtggaagacgatcg
tctattgtattttgcacgaatggggttctgttgagggtcttggtaacagctggcaatggt
aggttcagatatgaagcctcatcaaagatggccaaggatgcatttcctgacatcactcac
atcatcgtggatgaaattcacgagagagatcgattctctgattttatgttaacaatcatc
agagacatgcttcctttgtatcctcatctacgtgtggtattgatgagtgctacactagat
gctgaaagattttctcaatactttggtggctgcccgatcatacgtgtccctgggttcact
tatgatgtgaaaaggctatatctggaagatgttctcctgcttgtaaaatcagagtcgaat
aaagtttcccatcttgattgcactcccaaaactaattttgatgttaactctgagttaact
gaagattacagacttgcccttgacgaggctattaatattgcttggtcaaatgatgagatg
gattccctcttagacttcgtttcaactggtagaggacttaattttcagcaatccatgaca
ggtgtcacaccattaatggtttttgctagaaaaggtagagtgggtgatatgtgcatgctt
ctttcctttggtgccaattgccatttacaagataaacaaggcaatactgcgcttgcatgg
gctgaacatgagaaccagaaagaagcttcggagattctaagaaaacatctaaacacaacc
ttggtagatccagcagaagaaaagaagttgctcgatagatacttgcaagatgttaatcct
gaattaattgatgttatcctcatagaggaattactgagaaaaatatgtacagaatctaaa
gaaggggctattcttgtttttcttccgggatgggatgatataaatagagcacgggacata
ttaagttctagtaatttgttcaaagattcttctaagtttttgatattagctcttcattct
atggtcccggctgcagaacagaagaaagtttttaaaaggccgcctcaaggtcgcaggaag
attattctttcaacaaatatggcggaaacagctgtcacaatcgatgatgttgtatttgta
attgatacaggaaggatgaaagaaaaaagttatgacccttataataaggtatcaactctt
caatcatcttggatttcaaaagcaagtgaaaaacagagggaaggacgagcagggaggtgc
cagcctggaatatgctaccatctttactcgaaacttagggcagcttcgctgcctgaattc
caggtgcctgagatcaagagaacaccgattgaagaactatgtttgcaggtgaaacttctt
gatccaagctgcaaaatagaagacttcttgaaaaaaacgttagatcctccggtttctgaa
gccattcataatgcggttactgttctcaaagatattggggcgttgtcacccaatgaggaa
ctcactgagcttggggagaaacttggttggatgcctgttcatcctttaacaagcaagatg
ctgctttttgctatctcagttggctgtcttgacccagctttgactttagcttgtgctagt
gattatagagaccccttcaccctttccatgtttcctaatgacaaaaggaaagcaacaact
gctaaaagtgagttggcttcgttatatgggggccatggtgatcaattagcagttatagca
gcctttgattgctggaaaggtgccaaacaaatgggagtagaggcacggttttgttctcag
tatttcgtgtccaaaggcgtcatgaacatgctatcaggaatgcgtgcacaactccaaaat
gaactccataggaatggattcattcctgatagtttatccagctttagtgaaaatgctcaa
gatattggtataatccatgcagttcttgttgcgggtttatatcctagagtgggaaggata
cttccacctagaaagaatacgcaacggttggttatagaaaatgctaacagcgagaagatt
cggatacaccctcagtccgttaattctaagtttagcttcaggaatcaaaatgtcagtcct
ttggttatatatgatgagataacacgcggtgatgggggtttgaatattagaaattgcagt
gttattggcccgcttcctatattattgcttgctacagaaattgcggtggcccctactgat
gatggtagcgaagatgatagtgagaccgtttatgaagatagtgatgaggaagaagataat
gaagacgaaacgaggatgaggcatgatgatagaataatgtcttcccctgagaatgtagtc
aaagttattgcagataggtggctttcgtttgaaactacagccctggatgctgctcagatt
tactgtttgagagaaaggttgtctgccgcaatcatgttcaagatcacacatccaggaaaa
gatcttcctgaaattcttgcagcctccttacgtgcaatagctaaagtactatcttatgat
ggcctttctgggatctacacacctctggaatctgtggactccctgacttctatggttaaa
gacactgatattgggcagccggtcagaagttcaaataactttcttaaatcgcttctctca
tatggttcacaacagtactcccaaaaacgtagaggggatgcagtacagttcaaacatcat
gcccatccatctaattcaggaccaccaaaccaacataaaaatcaggccttgaacggatct
agtgctcccaggctggactctctcaaacgccaacgtggaaacaaggcttaa
DBGET
integrated database retrieval system
