Erigeron canadensis (horseweed): 122611131
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Entry
122611131 CDS
T07610
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122611131
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
122611131
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
122611131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
AAA_19
T2SSE
DEXQc_Suv3
IstB_IS21
DUF6385
Motif
Other DBs
NCBI-GeneID:
122611131
NCBI-ProteinID:
XP_043640038
LinkDB
All DBs
Position
8:32100337..32124260
Genome browser
AA seq
2081 aa
AA seq
DB search
MMLLEQPRLSNSLREPFDADQAYLHRKSILQAHLNRHRSEKSHDEFEVARKIVYRWDEAS
TEVRQAYKQFVGAVVELIDGVEINEEFKEVALAVHRLFGSHGEEEEVNRRFIEKKSELQK
LLGHVVSDAKLQKVVNAIQSLSNLQPDNHEIQVNGNDDGQEFGADLVFHNPSRFLVDASF
EGDLCGEFKNVTSTSLHGEWYDHSESTNRHSAVGTFDLGWLSDECSRIVNRSTSQLPQDE
LAMAICRVLDSDKAGDEIAGDLLDLVGDGAFETVQNLIAHRKDLVDAIHHGMLNLKSEKV
VSSSQQRMPSYGTQVTVQTESEKQFDKLRRKEEKKHKRGTDYGFDSDLSVMSFHSLLQAS
AKKSPFDDLIGHGEGSNTAATALPEGTTRKHHKGYEEVSIPPTQTAPMRPGEKLIEIKEL
DEFAQAAFQGYKTLNRIQSRIFQTTYHTNENILVCAPTGAGKTNIAMIAVLHEIGQHFKD
GYLHKDEFKIVYVAPMKALASEVTKAFSHRLAPLNMIVRELTGDMQLSKNELEETQMIVT
TPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQSMIRI
VGLSATLPNYLEVAQFLRVNPEAGLFFFDSSYRPVPLAQQYIGISEPNYLARNDLLNEIC
YKKVVESLKQGHQVMVFVHSRKDTGKTADKLIDLARKYDELDLFANDEHPQFQLFKMEVS
KSRNKQLAQLFELGAGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVV
IKGTQIYDAKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLSHYLRLLTSQL
PIESQFLSSLKDNLNAEVTLGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGWDEVVADP
SLGFKQRSFVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIHYSSVETYNEMLRR
HMSDSEIIDMVAHSSEFENIVVREEEQNELENLARTVCPLEVKGGPTNKYGKVSILIQLY
ISRGSIDAFSLISDAAYISASLARIMRALFEICLRRGWCEMTSFMLEYCKAVDRQIWPHQ
HPFRQFDRDISPEILRKLEEQEIDLDHLQEMQEKEIGAMIRYAPGGRVVKQYLGFFPSIL
LTATVSPITRTVLKIDLVLSPDFVWKDRWHGAAQRWWILVEDSENDHIYHSELFTLTKRA
AKGEPRKLSFTVPIFEPHPPQYYIRAVSDSWLQAEAFYTVSFKNLALPESHTTHTELLDL
KPLPVTALGNKVYEALYGFSHFNPIQTQAFHVLYHKQNNILLGAPTGSGKTISAELAMLH
LFNTAPDMKVIYIAPLKAIVRERMNDWKNGLVSKLGKKMVEMTGDYTPDMMALMSADIII
STPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERPVR
FVGLSTALANAQNLADWLGVEEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPT
YAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPVQFLAMQEEALQMVVSQITD
QNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGT
EYYDGKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHDPKKSFYKKFLYEPFPVES
SLRDQLHDHINAEIVSGTISHKQDAVHYLTWTYLFRRLMVNPAYYGLEECDPESLNSYLS
SLVQNTFEDLEDGGCIKMDEDNVEPTMLGSIASQYYLKYMTISMFASNIGPDTSLEVFLN
VLSAASEYDELPVRHNEENYNEGLSAKVPYAVDKDRFDDPHVKTNLLFQAHFSQVELPIS
DYYTDLKSVLDQSIRVIQAMIDVCANSGWLSSSITCMHLLQMVMQGMWFERDSPLWMLPC
MTDDLVSLLQKGGISCVQQLLDLSKTNMQSRFGNITSKLQQDLQHFPRIQVNFRIQGTNV
GNDEIPSLSIRLEKSNRRKTARAFTPRFPKLKDEAWWLVIGNTLTSELHAIKRISFTERL
VTRMKLPQSTTSFQGMKLLLISDCYLGFDQEYSIEQLMESW
NT seq
6246 nt
NT seq
+upstream
nt +downstream
nt
atgatgttgttagagcagccacgactatcaaactcactccgtgaaccattcgacgccgat
caagcttaccttcaccgtaaatctattcttcaagctcaccttaatcgtcacaggtcagag
aaatcacatgatgagttcgaagttgctcggaaaattgtttatcgatgggacgaagcgtct
actgaagttcgacaagcatacaaacaatttgttggggctgtggtcgagttgattgatgga
gtggaaataaatgaggagtttaaagaagtggcattggcagtacataggctgtttggttct
catggcgaggaggaagaagtaaatagaaggttcatcgagaagaaatctgaattgcaaaaa
ctacttggtcatgtggtttcggatgcaaagctacagaaagttgttaatgccattcaaagt
ctttccaatttgcagccagacaaccatgagatacaagtaaacgggaacgatgatggtcaa
gaatttggtgcggatctggtctttcataacccttcccggttcttggttgatgcttctttt
gagggagatctgtgtggggagtttaaaaatgtaacttctacttcacttcatggagagtgg
tacgatcacagtgagagcacaaatcgccattctgctgttggaacatttgatttaggatgg
ttaagcgatgaatgcagcagaatagtaaatcgtagtacttctcagcttcctcaagatgaa
ctagcaatggcaatttgccgggtacttgattcagacaaggccggggatgagatagctggt
gatttattggatctagtaggtgacggtgcatttgaaacggtccaaaaccttattgcgcat
aggaaggatcttgtcgatgccattcaccatggaatgttgaacttaaaatctgaaaaggtg
gtttctagttctcaacaacgcatgcctagctatggtactcaggttactgttcaaacagaa
tcggaaaaacagtttgataaattaagacgcaaagaggaaaagaaacataaacgcgggaca
gattatgggtttgacagcgatttgtctgtaatgagttttcattctttgcttcaagcaagt
gcaaagaaaagcccgtttgatgatctgattggacatggtgaagggtccaacacagcagct
actgcacttcctgagggaactactcggaaacatcataagggatatgaagaagtttccatt
ccacctacacagactgcacccatgaggcctggagaaaagctgattgaaataaaggagttg
gatgaatttgcacaagctgcttttcaaggctacaagacactcaaccgtattcagagcaga
atatttcaaactacttaccatactaatgagaacattctggtctgcgctccaactggagcc
ggtaaaacaaacatagctatgattgctgttctgcatgagataggacagcacttcaaagat
ggttacttgcataaagatgagtttaagatagtttatgttgctccaatgaaggctttagca
tctgaagttaccaaagcatttagccatcgattagctccgttgaacatgattgtaagagaa
cttactggcgacatgcagctttcaaagaatgaacttgaagaaactcagatgattgtgaca
acacctgagaaatgggatgtaattacccgtaaaagtagtgacatgtctctctcgatgctg
gtaaagctcctaatcattgatgaagtgcatctgctgaatgatgatagagggcctgttata
gaagcattagtggctcgtactcttcgtcaggtggagtcaacgcagtccatgatccgtatt
gtgggcctttcagctactcttcccaattatttggaggtggcacaattcttgagggttaat
ccggaggcaggtcttttcttctttgattctagctaccgtcctgtgcctctcgcacagcaa
tatattggaatttcggaaccgaactatctagcaaggaatgatctgttgaatgaaatttgc
tacaaaaaagttgttgaatccttgaagcaagggcaccaggtgatggtgtttgttcattct
cgtaaagacactggaaagacagcggataagctgattgaccttgctcggaaatatgatgaa
ctagatctctttgcaaatgatgaacatcctcagtttcagctgttcaagatggaagtttca
aagtccagaaacaaacagcttgcccagctctttgaattaggagctggcattcatcacgca
gggatgttgcgtgctgatagaggtttgactgagcggcttttctctgatggattgttgaaa
gtccttgtttgtacggcaactttggcatggggagtaaatctacctgcacacactgttgtg
atcaagggaactcaaatatatgacgcaaaggctggtggatggcgagatctgggtatgctg
gatgttatgcagatattcggacgtgctggaagacctcagtttgataaaagtggcgaaggc
attataattacgtctcatgataaattatcccactatctgcgacttttgacaagtcaactt
cccatagaaagccagtttctcagctccttgaaagataacttaaatgcagaggtgacattg
ggaactgtaacaaatgtgaaggaagcatgtgcatggcttggatacacttaccttttcata
aggatgaaaatgaatcctttggcatatggtattgggtgggatgaggttgttgcagatcct
tcattgggttttaagcaaagatcttttgttactgatgctgcacgtgcacttgacaaagct
aaaatgatgcggtttgatgaaaaaagtgggaatttctattgtactgaacttggtcgcatt
gctagtcacttctacatccattattctagtgttgagacatacaatgagatgcttaggcgc
catatgagtgatagcgagataattgacatggtggctcattcttcggagtttgaaaatatc
gttgttcgggaggaggagcaaaatgaattagaaaatttggcacgcacggtctgtccatta
gaagttaagggcggtcccactaataaatatggaaaagtatctattttaatccagttatat
atatctcgtggatcgatagatgcattttctttaatttctgatgcagcatatataagtgcg
agcttggcgcgtataatgagggctcttttcgaaatttgtttgcgtagaggatggtgtgag
atgacgtccttcatgttagagtattgcaaggctgttgaccgtcaaatatggccccatcag
catcctttcagacaatttgacagagacatctcaccagagatacttcggaagttagaagaa
caagaaattgacctggaccatctccaagagatgcaggagaaggaaataggagctatgatc
cgttacgcacctggtggaagggtagtgaagcagtatttaggctttttcccatccattttg
ttgactgctacagtaagtccaatcaccagaaccgtgttaaagatagatctggtcttatct
ccagattttgtgtggaaagatcgttggcatggtgccgcacaacgctggtggattcttgtt
gaggattcagagaatgatcatatctaccactcagagcttttcacattgaccaagcgagcg
gcaaaaggagagccacggaagctttctttcactgtgcccatatttgaaccacatcctccc
caatactacattcgtgctgtatctgattcatggttgcaggctgaggctttttatacagtt
tcctttaagaaccttgccctgccagagagccatacaactcataccgaacttctagatctg
aagccgcttcccgtgactgcacttggcaacaaggtttatgaagctttgtacggattttcg
cacttcaatcctattcaaactcaggcttttcatgttttatatcacaaacagaacaacatc
ctcttaggagctcctactggaagtggtaaaactatatctgcagagctcgctatgcttcat
ctattcaatacagctcctgatatgaaggttatctacatagcaccattgaaggccattgtt
cgagaaagaatgaatgattggaagaatggacttgtctctaaacttggaaagaagatggtt
gaaatgactggtgattacacaccagatatgatggccctcatgtcagcagatatcattata
tcaactcctgaaaagtgggatggtattagtcgtaattggcacagccgaagttatgttacg
aaggttggtcttatgattttggacgagattcacctacttggagcggatcgaggacctata
cttgaggtcatcgtctcaaggatgagatacatatcatcacaaacggagcggcctgttcgg
tttgttggattgtcaacagcactagcaaatgcacagaatctagctgactggttgggtgtc
gaggagattggtttgtttaatttcaagccaagtgtaaggcctgtgcctcttgaagttcat
atacagggatatccagggaagttctactgtccaagaatgaatagcatgaataagcctact
tatgctgccatatgtacacattcacctacaaagcctgttctaatatttgtttcatctcgc
cggcaaacaaggttgactgcattagacctcattcagtttgcagcttcagatgaacatcca
gtacagtttttggccatgcaagaggaagcattgcaaatggttgtttctcagatcactgat
cagaatctcaggcacactctacaatttggtattgggttacatcatgcaggattgaatgac
aaagatagatctctcgtggaggaactgtttgcaaacaacaagattcaggtactggtttgc
acaagtacgttagcttggggggtaaaccttcctgctcatttggttataataaagggaaca
gagtattatgatgggaaggccaagcgttatgttgattttccaattacagacatcttgcaa
atgatgggccgtgcaggtcgtcctcagtatgatcagcatgggaaagctgttattcttgtt
catgatcccaaaaaaagcttttataagaagttcctttatgaaccatttccagttgagagc
agtcttcgagaccagctccatgatcacattaatgctgaaatagtttctgggacaatttct
cataagcaggacgcagtacattatttgacctggacatatcttttccgcaggctgatggtt
aatccagcttattatgggttggaggaatgtgatcctgaaagtctaaattcttacttatcc
agcctagtacagaacacatttgaagatttagaagatggcggatgcattaaaatggatgaa
gataatgtggagcccacaatgttgggctcaatagcatcacagtactatttgaaatacatg
acaatttccatgttcgcttcaaatatagggccagatacctctcttgaagttttccttaat
gtactttctgctgcttctgaatacgatgaacttcctgttcgtcataatgaggaaaattac
aatgaagggttgtcagcaaaagttccatatgcagtggacaaggatcgctttgatgatcca
catgttaaaacaaatttactttttcaggcacatttctctcaggtagaactaccaatcagc
gactattacaccgacttaaagtcagtgttggatcagagtatacgtgtaatacaagcaatg
atagacgtatgtgcaaatagtggatggctctcgagttctattacgtgtatgcatcttctt
cagatggtcatgcagggtatgtggtttgagagggattctcccctatggatgctgccatgc
atgactgatgaccttgtcagtttgttgcaaaaaggtggaatttcgtgtgtacaacaactg
ttggatctatcaaagacgaatatgcaatctaggtttggaaatatcacttcaaaactacag
caggatctacagcattttccccgtattcaagtcaactttagaattcaaggaacaaatgta
ggcaatgatgaaatcccgagtcttagcattcggttggagaaatccaaccgcagaaaaaca
gcaagagcttttacacctcgttttcccaagttaaaagatgaagcctggtggttggttatt
ggaaacactttgacttctgaattacacgctataaaaaggatttctttcacagaacgtttg
gttacccgcatgaagttaccgcaaagcaccactagtttccagggaatgaagctacttctt
atctcagattgttatcttggatttgatcaagaatactctattgaacaacttatggaatct
tggtaa
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integrated database retrieval system
