Erigeron canadensis (horseweed): 122611147
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Entry
122611147 CDS
T07610
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122611147
Enzymes [BR:
ecad01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122611147
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122611147
NCBI-ProteinID:
XP_043640061
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All DBs
Position
1:175536..177080
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AA seq
456 aa
AA seq
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MKVNHCGWIPPVVPLFGLLLLASAPTTMLGGTDNNIGIVHLDSFTKERAHNATRAAIKAY
NPNPESAILNFSKLVEESLDGITNKRNSTRRKLKGRAAAGRCMATNPIDRCWRCNNRNWA
KNRQALGRCARGFGEHTTGGMGGRIYVVTDVSDDDMLNPKKGTLRYGVIQDRPLWIIFQK
SMVITLKQELIMNHDKTIDGRGVEVHIAYGAGLTIQFVHNIIIHGIRIHHIVSKSGGMIR
DSPGHYGLRTVSDGDGISIFGSSRVWVDHVSLDHCTDGLIDAIMASTAITISNCKFNHHN
DVMLLGANDNFRGDEIMQVTIAFNRFGKGLVQRMPACRWGFFHVVNNDYNKWEMYAIGGS
RNPTIISQGNRFRAPDNVHAKEVTHRDHFPKKIWKKWKWRTVNDLFLNGAFFVASGDHSV
IAQKHKRHMVQAKDGSAVGRLTRYAGVLPCTHGRPC
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgaatcactgtggctggattcccccagtggttcccctttttggcttgttatta
ttggcttctgccccgacgactatgttaggtgggacggataataatataggtattgtacat
ttagacagcttcacaaaagaacgtgctcataatgccaccagggctgccatcaaagcatac
aatcctaaccccgagtcggccatcctcaatttcagcaaactagttgaggagtctttagat
ggaattaccaataagcggaattcgacccggaggaagctaaaaggacgtgctgctgcaggt
agatgcatggctacgaacccgatagacagatgttggaggtgcaataatagaaactgggca
aaaaaccgccaagccttggggagatgtgcacgtggatttggagagcacacgacagggggg
atgggtggtcgtatctatgtggtcacggatgtttcggatgatgacatgttgaacccgaaa
aagggaaccctgagatatggggtgatccaagacagaccgttgtggatcatcttccagaag
tctatggtgatcaccctcaagcaagagcttataatgaatcatgacaagactattgacggg
agaggggttgaagttcacatagcatacggcgcgggcctcaccattcagtttgttcacaac
atcataattcatgggattcgtatacaccacatcgtgtccaagagtggaggaatgataagg
gactccccgggtcattacggattaaggaccgttagtgacggggatggcatctctatattt
ggctccagcagggtgtgggtggatcacgtgtcgctggatcactgcacagatggtctgatt
gacgccatcatggctagcaccgctatcaccatctccaactgcaaattcaaccatcacaac
gacgtgatgctgctgggggcaaacgataacttcaggggagacgagataatgcaagtgacg
atcgcattcaacaggttcggcaaggggttggtgcaacggatgccagcgtgccgctgggga
ttctttcatgtggttaacaacgactacaacaaatgggaaatgtacgccatcggcgggagc
cggaaccctaccattatcagccaaggcaaccgatttagagctcctgataacgtccatgca
aaagaggtgacccatcgggatcactttcctaagaaaatatggaagaagtggaaatggaga
acggtgaatgaccttttccttaacggggctttcttcgtggcgtcgggtgaccattcggtt
attgctcagaagcataaacggcatatggtgcaagccaaggatggatctgctgttggtcga
ctcactcgctatgcgggtgtgctcccatgcacccatggcagaccttgctaa
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