Erigeron canadensis (horseweed): 122611152
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Entry
122611152 CDS
T07610
Name
(RefSeq) WD-40 repeat-containing protein MSI3-like
KO
K10752
histone-binding protein RBBP4
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03082
ATP-dependent chromatin remodeling
ecad03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122611152
03083 Polycomb repressive complex
122611152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecad03036
]
122611152
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
122611152
Histone modification proteins
HAT complexes
HATB complex
122611152
HDAC complexes
Sin3A-HDAC complex
122611152
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
122611152
PRC2.2
122611152
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
122611152
Heterochromatin formation proteins
Other heterochromatin formation proteins
122611152
Chromatin remodeling factors
NuRD complex
122611152
NuRF complex
122611152
NuRF complex (fruit fly)
122611152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
CAF1C_H4-bd
WD40
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_EML
WD_LRWD1
MIOS_WD40
Beta-prop_WDR19_1st
ANAPC4_WD40
WD40_RFWD3
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
122611152
NCBI-ProteinID:
XP_043640063
LinkDB
All DBs
Position
8:41156949..41159973
Genome browser
AA seq
401 aa
AA seq
DB search
MANEEEGGSGEDYQLEEEFNVWRKNTPFLYDLVISHSLEWPSLTVQWLPSPPSLYDNGSF
AVHKLILGTHTSDDCPNFLLVAEAHLPVNPSSALETNLDNHRIPKIEVIQKIHVDGEVNR
ARCMPQIPSIVAAKTSSSEVYVFDSTKQPLDHEGGSCNPDVKLRGHDKEGYGLSWNPFKE
GYLLSGSNDCKICLWDVSAMPANKVLDPKHIYEDHGSVVEDVSWHLMNGSLFGSVGDDCK
LMIWDLRTNKHEQAVVVHEKEVNYLSFNPYNEWVLATASSDTTVGLFDMRKLTAPLHVLS
SHEEEVFQVEWDPNHETVLASSAGDRRLMVWDLNRIGDEQLEGDAEDGPPELLFSHGGHK
AKISDFSWNKNEPWVISSVAEDNALQVWQMAESIYREDDGV
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgaagaagaaggcggcagcggagaagactatcaattggaagaagaatttaac
gtgtggagaaaaaacacaccttttttatacgatctagtcatctctcactctcttgaatgg
ccatcactcaccgtccaatggctgccgtcgccgccgtcgttatacgacaacggttctttc
gccgttcataaattgatacttgggacccacacttctgatgactgtcctaatttcctgctt
gttgctgaagctcatttgcctgttaatccttcttctgcactcgaaactaatttggataat
catagaatccccaagatagaggtgattcagaagatacatgttgatggagaggtgaatcgg
gctcggtgtatgccacagattccgtcgattgttgcagcgaagactagttcttctgaagtt
tatgtatttgactcgacaaagcaacctttggatcatgaaggaggttcttgtaaccctgat
gttaaattgaggggtcatgacaaagaagggtatggattgtcatggaacccttttaaagaa
gggtatctcttgagtggttccaatgattgcaagatttgcttgtgggatgtgtcggcaatg
cctgccaataaagtacttgatccaaaacatatttatgaggatcatggcagtgtggttgaa
gatgtttcatggcatttgatgaatggtagtctatttggatctgttggggatgattgcaaa
ctaatgatttgggacttgcgcacaaataaacatgaacaagctgttgttgttcatgagaaa
gaggtgaattacttatcttttaatccatataatgagtgggttctggctacagcctcttca
gataccactgttggtctgtttgacatgcggaagctgacagcaccattgcatgttttaagt
agccatgaggaggaagtattccaagttgagtgggatccaaaccatgaaaccgtgcttgca
tcctctgctggtgacagaaggttgatggtttgggatctaaacaggattggagatgaacaa
ttggagggagatgcagaggatggcccaccagaactcctattttctcatggtggtcacaag
gccaagatatctgacttctcatggaacaagaacgaaccatgggtgatatctagtgtggct
gaagacaatgctctacaggtctggcaaatggctgaaagcatttatcgtgaagatgatggc
gtttga
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