Erigeron canadensis (horseweed): 122611292
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Entry
122611292 CDS
T07610
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1
KO
K14411
RNA-binding protein Musashi
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122611292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122611292
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122611292
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
Nup35_RRM_2
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
122611292
NCBI-ProteinID:
XP_043640231
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Position
8:complement(3490713..3495165)
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AA seq
467 aa
AA seq
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MSGRKLVVLGIPWDVDTQGLKDYMRKFGELDDCIVMKERSSGRSRGFGYVTFTEVEDAKA
ALLAEHFLGNRALEVKIATPKEEMRAPSKKVTRIFVARIPLSVTEATFRSHFEKFGEITD
LYMPKDPTTKGHRGIGFVTFASADSVDDLMSETHELGGSNVVVDRATPKEDDFRPITRMP
PTQSGGYGAYNAYVTTRYAALGAPTSYDYPGSAYGRGESARGMGKKIFVGRLPQEASVED
LRIYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSAT
PVDDGGSSGASFMDNPEPPAYAGYGPMRAYGRMYGSLDFDDWGYGGMSGSLGRMGGTGGM
GRMGGPGGMGRMGGPSGMGRMAGTGGMGRLAGTGGMGRMGGDLGRMSGDLGHMDGDLGRM
TGDLGRTGGDYERMSGDLGRTGGSMSSIGGSLSGGRASRTDFRYRPY
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcagaaagcttgtggtattggggatcccatgggatgtagatacacaaggtttg
aaggattacatgaggaaatttggtgaattggatgactgtattgtcatgaaggaacgttca
agcggccgatctcgcggttttggatacgtgacctttacagaggttgaagatgccaaggct
gcactgttggcagagcatttccttggtaatagagcgctagaagtaaaaatagcaactcca
aaggaggaaatgagagcaccatcgaagaaagtcactaggatttttgttgctagaattcca
ctctctgttacagaagctacatttaggagtcattttgaaaagtttggtgagataactgat
ttatatatgcccaaggatccaactaccaaggggcatcgtggaattgggtttgttactttt
gcaagtgccgattccgtggatgatctaatgtctgagacccatgaactggggggttcaaac
gttgttgtcgaccgagcaacccctaaggaagatgatttccgaccaattacccgcatgcct
cctacccagagtggtggatatggtgcatataatgcatatgttacaactagatatgctgca
ttgggtgctcctacatcatacgattatccaggctctgcttacggaaggggggaatcagct
cggggaatgggaaagaaaatttttgttggcaggcttcctcaagaagctagtgttgaagac
ctgcgcatatattttggaaggtttggacgtatcttggatgtgtatgttcccaaggatcct
aagagatctggtcacagggggtttggttttgtgacctttgctgaagatggagttgcagat
cgtgtttcacgaaggtctcatgagatttgtggacaacaggttgcaatagattcagctacg
cctgttgatgatggtggttcgagtggagcctcttttatggacaatcctgaaccaccagca
tatgcaggttatggcccaatgcgagcttatggcaggatgtatggaagcttggatttcgat
gattggggttatggtggcatgagtggaagtttaggacgcatgggaggaactggaggcatg
ggacgcatgggaggacctggtggcatgggacgcatgggaggacctagtggcatgggacgc
atggcaggaactggtggcatgggacgcttggcaggaactggtggcatgggacgcatgggt
ggagacctgggacgcatgagcggggacttgggacatatggatggagacctggggcgcatg
accggcgacctgggtcgtacgggcggagactatgaacgcatgagtggagacttgggacga
acgggaggaagtatgagcagcataggtggaagtttgagtggagggagagcttcacgaaca
gatttcaggtataggccgtattag
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