Erigeron canadensis (horseweed): 122611325
Help
Entry
122611325 CDS
T07610
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122611325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122611325
03012 Translation factors [BR:
ecad03012
]
122611325
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122611325
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122611325
Translation factors [BR:
ecad03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122611325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
T2SSE
AAA_19
ATPase
Myosin_head
AAA_16
PhoH
Dicer_dimer
AAA_23
Motif
Other DBs
NCBI-GeneID:
122611325
NCBI-ProteinID:
XP_043640273
LinkDB
All DBs
Position
8:complement(19433857..19449422)
Genome browser
AA seq
1160 aa
AA seq
DB search
MQNYLRLRFFQLAKLASSNTNHLKRKSSCCYHSRTLMTCSIYYKYNKCSPDSIFRHPFFT
RFFSSPSSSSFYDQFSDDEYECDYDSQPASSSVANIDEWKWKLTMLLRSETDQEIVSRDK
RDKRDYEQISNVATRMGLYCEMYGKVMVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRV
EGLLQEHLDRMHLNSGDVASTTNETSHEAEVVNRGGNQDPLVDGSLMEKVLQRRSLQMRN
MQRAWEESPEGKKMLQARMSLPSFREKERLLQAIAQNQVIIISGETGCGKTTQLPQYILE
SEIESGRGAFCNILCTQPRRISAMAVAERVSTERGEPLGESVGYKVRLEGMKGKNTHLLF
CTSGILLRRLLSDNNLHGVTHVFVDEIHERGMNEDFLLIVLKELLPRRRDLRLILMSATL
NAELFSNFFEGAPMIHIPGFTHPVRAHFLEDILEITGYKLTSFNQIDDYGQEKLWKTQRQ
LVPRKRKNQITTLVEDALSQSSFESYSLKARDSLSCWTPDSIGFNLIEAVLCHICRKERE
GAVLVFMTGWDDISCLKTQLKAHPLLGDPNRVQLLTCHGSMATSEQKLIFEKPPPNVRKV
VLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ
PGECYHLYPRCVYEAFSEYQLPELLRTPLNSLCLQIKSLHVGSIGEFLSAALQPPEPLAV
QNAVDFLKLIGALDENENLTHLGEYLAMLPLDPKLGKMLIMGAFFRCVDPILTIVAGLSV
RDPFLLPQEKKDKASDAKSRFSAKDYSDHMALVRAYEGWKEAEREGSAYEYCWRNFLSAQ
TLQAIHSLRNQFHYILKDARLLEAETGINNRLSHNQSLVRAIICAGLFPGIASVVHRETS
MSFKTMDDGQVMLYANSVNTRYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGG
LVNGATPGHLKMLGGYIDFFMDPTLADSFVKLKQELDQLLQKKLKDPIFNIHKEGKYLML
AVQELVSRDQCEGRFVFGRETKKLKESPDNDSFTRDGANPKSLLQTLLMRAGHTPPKYKT
KHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSGSKKEDDTSPPDLT
DNMLKLLSKRRKPTSRSGRG
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattacttgaggttaaggttttttcaattagctaaattagcatcttctaatact
aatcatttgaaaagaaaatcatcatgttgttatcattcaagaaccctaatgacttgctca
atctactacaaatacaataagtgttcaccagacagtatcttccgtcatccctttttcact
cggttcttttcatcaccttcttcttcttcattttacgatcagttctccgatgatgaatac
gaatgcgattacgattctcaacctgcatcatcgtccgtggcaaatattgatgagtggaag
tggaaacttactatgttgttacgtagtgaaacagaccaagagattgtgtctagagataaa
agagacaagagagactatgagcaaatatctaatgttgccacaagaatgggcctttactgt
gaaatgtatggaaaagtgatggttgcaagcaaggtgccacttcccaactacagacctgat
cttgatgataagcgtccccaaagggaggtagttatcccattaagtttgcaaagaagagta
gaaggtttgcttcaggagcatcttgatcgaatgcacttgaattctggagatgttgcgtcc
actacgaatgaaacaagtcatgaggctgaggttgtgaacagaggtggtaaccaagatccg
ttggtagatgggtctcttatggagaaggtacttcaaagacgaagtttgcaaatgcgaaat
atgcaacgagcttgggaggaatcaccagaaggcaagaagatgctacaggcacgcatgtct
cttccttcattccgagagaaagaaagacttctccaagcaattgctcagaatcaggtgatt
atcatttctggtgagactggatgtggcaagaccactcaacttccacaatacatattggag
tctgagatagaatctggtcgcggtgcattttgtaatattctttgtacacaacctcgaaga
atttctgctatggctgttgcagaaagagtttctactgaaaggggagagcctcttggtgaa
tcagttggttacaaagttcgattagagggtatgaaagggaaaaatacacacctacttttc
tgtacaagtggaattttgcttcggaggctgctaagtgacaacaatttgcatggtgtaacc
catgtttttgttgatgaaattcatgagcgaggcatgaatgaagatttcctattgattgta
ttaaaggaactccttccacgtcgtagggacctgagactgatactgatgagtgctacattg
aatgcggagctattttccaacttttttgaaggagcaccaatgattcacattcctggcttc
actcacccagtcagggcacattttttagaagatatactggagatcactgggtataagtta
acctctttcaaccaaattgatgattatggccaagaaaagttgtggaaaacacaacggcag
ctagttccacggaaaaggaaaaaccagattactactctagttgaggatgccttgagtcaa
tcgagctttgaaagttatagtctcaaagcacgtgattctctatcatgctggacaccagat
agtattggatttaatctaattgaggcagttttatgccatatctgccgtaaggaaagagaa
ggtgctgttttagtctttatgactgggtgggacgatatcagttgtttgaaaactcaactt
aaagctcatcctttacttggggatccaaacagagttcaactgttaacatgccatggttcc
atggcaacgtctgaacagaaactcatatttgagaagccacctccaaacgtgcgtaaagta
gtactcgccacaaatatggcagaagcaagtatcacaatcaatgatatagtttttgtggta
gactgtggaaaagctaaagagaccacttatgatgctctgaataatactccatgtcttcta
ccttcatggatatctcaagcatctgctcgacaaagaagaggtagagcaggccgtgtgcaa
ccgggagaatgctaccatctctatccccgatgtgtttatgaagctttctctgaatatcag
ctacctgagctcttaaggactccccttaattctctttgcttgcaaataaaaagtttgcat
gttggtagcatcggggaattcctctctgcagctctacaaccaccggagccattggctgtt
caaaatgcagtggattttttgaagttgattggagcattagatgagaatgaaaatcttaca
catcttggtgaatatctggcaatgcttcctctggatccaaagctagggaaaatgctgata
atgggagctttctttcgctgcgttgatcctattcttacaattgttgcgggactcagtgtt
agagatccttttcttttgcctcaagagaagaaagataaagccagtgatgcaaaatctagg
ttctctgccaaggattacagcgatcatatggcgcttgtccgtgcttatgaaggatggaaa
gaagctgaaagagaaggatctgcttatgagtattgctggaggaattttctttctgcccaa
acacttcaggctatacattctcttcggaatcagtttcactacatcttaaaagatgctcga
ttgcttgaggctgaaacaggcattaataatagattgagtcataatcagtcattggttaga
gccattatatgtgcgggtctctttcctggcattgcatctgtagtgcacagggagacatca
atgtccttcaaaactatggatgatggccaggtcatgctatatgcaaattctgtcaacaca
cgataccagacgataccatatccatggctggtgtttggggaaaaagtgaaggtcaacact
gtatttatacgggattcaactggcgtgtctgattcaattttaattctttttggtggtggt
ttagtcaatggcgctacgcctggtcacttgaaaatgttaggagggtacattgatttcttc
atggatcctactttagcggactcctttgtcaaattaaagcaggaactcgatcagcttttg
caaaagaagctaaaagatcccatcttcaacatccacaaagaaggaaagtatctcatgctt
gctgttcaagaactcgtgtcaagagatcaatgtgagggtagatttgtatttggccgtgaa
accaaaaagttaaaggagtcgcctgacaatgatagctttacaagggatggagcaaaccca
aaaagcttactgcagaccctgctgatgagggctggccacactcctccaaaatacaaaaca
aaacatctaaaaacaaatgaatttagggccttagtagaattcaaaggaatgcaatttgtt
ggaaaaccaaaaagaaataaacagcttgcagaaagggatgctgctattgaggcattggcc
tggttgacccacacttctggctcaaagaaagaagatgatacttcacctcctgatctcact
gacaatatgcttaagcttctgagtaagagaagaaaacccacatctcgctctggccggggg
tga
DBGET
integrated database retrieval system
