Erigeron canadensis (horseweed): 54108554
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Entry
54108554 CDS
T07610
Symbol
rpoA, HGF93_pgp035
Name
(RefSeq) RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
54108554 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
54108554 (rpoA)
03400 DNA repair and recombination proteins [BR:
ecad03400
]
54108554 (rpoA)
Enzymes [BR:
ecad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
54108554 (rpoA)
Transcription machinery [BR:
ecad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
54108554 (rpoA)
DNA repair and recombination proteins [BR:
ecad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
54108554 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-GeneID:
54108554
NCBI-ProteinID:
YP_009747348
UniProt:
A0A6G7IWU3
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Position
Pltd:complement(78015..79022)
Genome browser
AA seq
335 aa
AA seq
DB search
MVREKITVSTRTLQWKCVESAADSKRLFYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
CITRAKSEKISHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQD
IILPPYVEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVR
NANHSIHSYENGNKEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDN
QHMFPLPPFTFYDKLAKLTKKKKKMALKSIFIDQSELPPRIYNCLKKSNIYTLLDLLNNS
QEDLMKMEHFRIEDVKQILGILEKNFVIDLPKNKF
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggttcgagagaaaatcacagtatctactcggacactacagtggaagtgtgttgaatca
gcagcagacagtaagcgtcttttttatgggcgctttattctgtctccgcttatgaaaggt
caagcagacacaataggcattgcgatgcgaagggctttgcttggcgaaatcgaaggaaca
tgtatcacacgcgcaaaatctgagaaaatatcacacgaatattctacgataacgggtatt
caagaatcagtacatgaaattttaatgaatttgaaagaaatcgtattgagaagtaatctc
tatggaacttgtgaggcgtctatttgtgtcagaggccctggatatgtaactgctcaagat
atcatcttaccgccttatgtagaaatcgtcgataatacacagcatatagctagcttgaca
gaacccattgagttggttattggattacaaatagagaagaatcgcggatatcttataaaa
gcgccaaatacctttcaagatggaagttatcctatagatcctgtattcatgcctgttcga
aatgcgaatcatagtattcattcttatgaaaatggtaacaaagaaatactatttctcgaa
atatggacaaatggaagtttaactcctaaagaagcacttcacgaagcctcccggaatttg
attgatttattgattccctttttacataccaaagaagaaaatttaaatttagaggacaat
caacacatgtttcctttacccccttttaccttttatgataaattggctaaactaacaaaa
aaaaaaaaaaaaatggcgttgaaatcgatttttattgaccaatcagaattgcctcccagg
atctataattgtctcaaaaagtccaatatatatacattgttggaccttttgaataacagc
caagaagatcttatgaaaatggagcattttcgcatagaagatgtcaaacaaattttaggg
attctagaaaaaaatttcgtaattgatttaccgaaaaataagttttaa
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