Enterobacter cancerogenus: CWI88_13930
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Entry
CWI88_13930 CDS
T05545
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ecan
Enterobacter cancerogenus
Pathway
ecan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWI88_13930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecan03019
]
CWI88_13930
03009 Ribosome biogenesis [BR:
ecan03009
]
CWI88_13930
Enzymes [BR:
ecan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CWI88_13930
Messenger RNA biogenesis [BR:
ecan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CWI88_13930
Ribosome biogenesis [BR:
ecan03009
]
Prokaryotic type
rRNA processing factors
CWI88_13930
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AUJ82081
LinkDB
All DBs
Position
2910214..2913405
Genome browser
AA seq
1063 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDQMQ
TPHYHVLRVRKGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPE
AAMEKPAAKPAAQKTAPEVAKAQPEQPGLLSRIIGALKKMFAGEEAQPEQPKEAPKQAKP
ERQQDRRKRQNNRRDRNDRSDRNERNDRNERNDRNERRDNRADNNESREQREDNRRNRRE
KPQQNVEDREIRQPAGDESDKTKQRDEQQPRRERSRRRNDEKRQAQQEVKSLNREAPVEQ
QESEQEERTQVMPRRKPRQLSQKVRVGAVQAEEAVVSAVETTEIETGTQLAKVDLPAVVD
TNVEQDDNTEGRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEM
ASGKVWIRYPVARPEQAVEEQAVTEEVIAPVATVEDVAVQAAAVVEPQVVEPQEVEPQVV
EPQAVETAPQAVDVETTHPEVIAAPVEAAPQFIAEEDAVVAQDVAQDAEPAATVEETADV
VVETVTEDVVQDVELDVEPVREAETVEEKAPEVKPEPVTAAVTPAHVATAPMTRAPAPEY
VPEAPRRSDWVRPEFHFDGKGSAGGHSATHQAAAPATRPQSVD
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgccctcgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggcaagatcacccgcattgaacccagccttgaagctgcatttgtcgattac
ggtgctgagcgtcacggtttcctccctctcaaagaaattgcccgcgaatacttccctgcc
aactacaactcccatggtcgtccgaacatcaaagatgttctgcgcgaaggccaggaagtt
atcgttcagattgataaagaagaacgtggcaataaaggcgccgcgctgaccacctttatc
agcctggcggggagctatctggttctgatgccaaacaacccgcgtgcgggtggtatctct
cgccgcatcgaaggtgatgaccgtaccgagctgaaggaagcgctggcaagccttgagctg
ccagacggcatggggcttatcgttcgtaccgcaggcgtgggcaaatctgccgaagcgctg
cagtgggacctgagcttccgtcttaagcactgggaagccatccagaaagcagctgaaagc
cgccctgctccgttcctgatccaccaggaaagcaacgttatcgtgcgtgccttccgtgac
tacctgcgtcaggacatcggcgaaattctgattgataacccgaaagtgcttgagctggct
cgccagcacattgccgcgctgggtcgtccggatttcacaagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccattatcagattgagtcacagattgagtctgccttccag
cgtgaagtgcgtctgccatccggcggctctatcgttatcgataccaccgaagcgctgacc
gctatcgacatcaactccgcacgtgctacgcgcggcggtgatatcgaagagaccgcgttc
aacaccaaccttgaagccgctgatgaaatcgcccgccagctccgcctgcgcgacctgggt
ggcctgatcgttatcgacttcatcgacatgaccccggttcgtcaccagcgcgcggttgaa
aaccgtctgcgtgaagcggtacgtcaggaccgtgcgcgtatccagattagccatatttct
cgctttggcctgctggagatgtcacgccagcgcctcagcccgtcgctgggtgaatcaagc
caccacgtctgcccgcgctgttccggtaccggcaccgtacgtgataacgaatctttgtct
ctctccattctgcgtctgattgaagaagaagcgctgaaagagaacacccaggaggttcac
gcgattgttcccgtgccaattgcctcctacctgctgaacgaaaaacgtgccgcggttagc
gccattgaagcgcgtcagggcggcgtacgttgcatcatcgtgccaaacgatcagatgcaa
accccgcactaccacgtcctgcgcgttcgcaaaggtgaagagacgtcaacgctcagctac
ctgctgcctaagctgcatgaagaagagatggccctgccatccgatgaagaacccgccgag
cgtaaactgcctgagcagcctgcgttagccaccttcatcatgccggaagcgccgccggaa
gccgcaatggaaaaaccggccgctaaacctgctgcgcaaaaaaccgcgccagaagtggcg
aaagcccagccggaacagccgggtcttctgagccgtatcatcggtgcgttgaagaaaatg
tttgctggcgaagaagctcagccggagcaaccaaaagaagcgccgaagcaagctaagcct
gaacgtcagcaggatcgtcgtaagcgtcagaacaaccgccgcgatcgtaatgaccgcagt
gaccgtaacgagcgtaacgatcgtaacgaacgcaatgaccgcaacgagcgtcgtgacaat
cgtgccgataacaacgaaagtcgtgaacaacgcgaagacaaccgtcgcaaccgtcgcgag
aagccacagcagaacgtggaagatcgtgaaattcgccagccggcaggtgacgagtctgac
aagactaaacagcgtgacgagcagcaacctcgccgtgagcgcagccgtcgtcgtaacgac
gagaaacgccaggcgcagcaggaagttaaaagcctgaaccgcgaagcaccggttgagcag
caggaatccgagcaggaagaacgcactcaggttatgccgcgtcgcaagccacgccagctc
tcacaaaaagtacgtgtgggtgccgtacaggcggaagaggctgtggttagcgcagtggaa
accactgaaatcgaaaccggtacgcagttggcgaaagttgacttgcctgccgtggtcgac
accaacgttgagcaggacgataacactgaaggccgcgataacgccggtatgccgcgtcgc
tcccgtcgttctccacgccatctgcgtgtgagcggccagcgtcgtcgtcgctatcgtgat
gagcgttacccaacgcaatcaccgatgccgctgaccgtagcctgcgcatcgccggaaatg
gcttcaggtaaagtgtggatccgctatccggttgctcgtccggagcaggctgttgaagaa
caggctgtcaccgaagaggttatcgcacccgtcgccaccgtagaagacgttgcggtgcaa
gcggctgccgttgtcgaacctcaggtcgttgagccacaggaagttgagcctcaggtcgtt
gaaccacaggccgttgaaacagcgcctcaggccgttgacgttgaaaccacgcaccctgaa
gtgattgctgcgccggttgaagccgcaccgcagttcattgctgaagaagacgcggttgtc
gcacaagacgtcgcgcaagacgctgagccagcagccactgtcgaagaaaccgctgacgtg
gttgtcgaaaccgttactgaagatgtggttcaggacgtcgaacttgacgtcgagcctgtg
cgtgaagccgaaaccgtggaagagaaagcgccagaggtgaaacccgagccggttaccgct
gccgtgacgccagcccacgttgccaccgcgccgatgacgcgtgctcctgcaccggaatat
gtgccggaagcgccgcgccgcagcgactgggttcgtcctgagttccactttgacgggaaa
ggttctgccggtggtcacagtgctacgcaccaggcggctgcaccagcaacccgcccacag
tctgttgactaa
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