Enterococcus casseliflavus: ECBG_02394
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Entry
ECBG_02394 CDS
T02623
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ecas
Enterococcus casseliflavus
Pathway
ecas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECBG_02394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecas03019
]
ECBG_02394
03009 Ribosome biogenesis [BR:
ecas03009
]
ECBG_02394
Enzymes [BR:
ecas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ECBG_02394
Messenger RNA biogenesis [BR:
ecas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ECBG_02394
Ribosome biogenesis [BR:
ecas03009
]
Prokaryotic type
rRNA helicases
ECBG_02394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
15143366
NCBI-ProteinID:
EEV40125
UniProt:
C9AB66
LinkDB
All DBs
Position
complement(3001851..3003374)
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AA seq
507 aa
AA seq
DB search
MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPML
EKIDPTNHQLQGLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLKDRP
HIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDVRQTLLF
SATMPPAIKNIGVKFMKEPEHVQIKAKEMTADLIDQYYVRSKDYEKFDIMTRLLDVQTPE
LTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHVIENLTKK
RMTPMRPPTEKEAFKGQLGAAIESVETKLDENGLDKYLQAADDLLERYSAQDLAALLLKT
MAKDPADLAPVKITPERPLPQGKKSFNKNGRRSNNSNGNRNRKENGGNRGGGNGNKARGN
YSKDGARKNNRRSNDKKRGFVIRNNQD
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaaagatctagaattatccaacgaattattgacttctgttgagcgtgccggc
tttgaagaagcaacacccatccaagaagcaacgattccattagccttagcaggcaaagac
gtgatcggtcaagcacagaccggtactggtaaaaccgccgcatttggtttgccaatgtta
gaaaaaattgacccaacgaaccatcaactacaaggattagtgattgccccaacccgtgaa
ttagcgatccaaacccaagaagaattgtaccgtcttggtaaagacaaaaaaattcgtgta
caagcagtttacggtggagccgatatcggccgtcaaatccgtcaactaaaagatcgtccc
cacatcgtagttggtacaccaggtcgtatgttagaccatatcaaccgccacaccttgaaa
ttaggcaccgttgaaacgcttgtattagatgaagcggatgaaatgttgaacatgggcttc
ttggaagatattgaaaaaatcatcagccaagtaccagatgttcgtcaaacattgctattt
tcagcaacaatgccgccagcaatcaaaaacatcggtgtgaaattcatgaaagagcctgaa
catgtacagatcaaagccaaagaaatgactgctgatttgattgatcaatactatgttcgt
tcaaaagattacgaaaaatttgatatcatgactcgcttattggatgtgcaaacgccagaa
ttgaccatcgttttcggtcgtacgaaacgtcgtgtcgatgaattggcgcgcggcttagaa
gcccgcggctataaagcagaaggcattcatggagacctttctcaacaaaaacggatgagc
gttttgcgttcattcaagagtggtcaactagatatcttagttgccacagacgttgcagct
cgtggattagatatctctggtgttacacacgtttataactacgatatccctcaagaccct
gaaagctatgttcaccggatcggacgtactggccgtgctggaaaaggcggaatgtctgtg
actttcgttacaccaaacgaaatgagctatctgcacgtcattgaaaacttaacgaaaaaa
cggatgacaccaatgcgcccaccgaccgaaaaagaagcgttcaaaggtcaattaggtgcc
gcaatcgaatctgttgaaaccaaattggatgaaaatggcttagataaatacttgcaagca
gccgacgatctattagaacgttattctgcacaagatttagcagcattgcttctaaaaact
atggcaaaagatcctgctgatttagcaccagtgaagatcacaccagagcgtccattgcct
caagggaaaaaatcattcaacaaaaatggtcgtcgcagcaacaatagcaacggcaatcgt
aaccgcaaagaaaacggtgggaaccgtggcggcggcaacggcaataaagcccgcggcaac
tattcaaaagatggtgcccgtaaaaacaatcgccgcagcaacgacaaaaaacgcggtttc
gtaatcagaaataaccaagactaa
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