Enterococcus casseliflavus: ECBG_02578
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Entry
ECBG_02578 CDS
T02623
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ecas
Enterococcus casseliflavus
Pathway
ecas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECBG_02578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecas03021
]
ECBG_02578
03019 Messenger RNA biogenesis [BR:
ecas03019
]
ECBG_02578
Transcription machinery [BR:
ecas03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ECBG_02578
Messenger RNA biogenesis [BR:
ecas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ECBG_02578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_22
AAA
Motif
Other DBs
NCBI-GeneID:
15143190
NCBI-ProteinID:
EEV40309
UniProt:
C9ABQ0
LinkDB
All DBs
Position
complement(2799911..2801206)
Genome browser
AA seq
431 aa
AA seq
DB search
MSDYLTMAELENKTLKEIYTFAKEFRIPYYSQMNKKELSLAVIRAQAEKQGFFYMEGILD
IVGQEGYGFLRPINYGPSAEDIYISSSQIRRFSLRNGDKVAGKARPPKESERYYGLMHVE
SVNGKDPEDAKERPHFPALTPLYPNRHLKLETTSGRLSTRMIDMLSPVGFGQRGLIVAPP
KAGKTSILKEIANGITDNYPEVELIVLLIDERPEEVTDLERSVKGDVVSSTFDLQPSNHT
RVSELVLERAMRLVEDKRDVVILMDSITRLARAYNLVVPPSGRTLSGGIDPAALYKPKKF
FGAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELQLSRSLAERRIFPAIDI
KKSGTRKEELLMSSEQLEETWRLRNNMLGDSLEFTEQFIQFLRKTKNNEEFLAAFHDVHF
GDKRQKRNIKR
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgagcgattatcttacgatggcagagttggaaaacaaaaccttaaaagagatctacacc
tttgccaaagagtttcgaattccttattacagccagatgaataaaaaagaattgtcattg
gctgtgatacgggcgcaggcggaaaaacaaggcttcttttatatggaaggaatcttggat
atcgtaggccaagaaggctacggttttttacgcccaatcaactacggaccgagtgcagaa
gatatctatatttcttcatcacagattcgtcggtttagtttgcgtaatggtgataaagtc
gccggtaaggcgcgcccgcccaaggaatctgagcgctattatggattgatgcacgttgag
tctgttaatggcaaagatccagaagatgccaaagagcgtccgcattttccagcgctgacg
ccgctttatccgaatcgtcatttaaaattggaaacaacgtcaggacgcctttctacgcgg
atgatcgacatgctgtcgccagtgggttttggacaacggggactgatcgttgctccgcct
aaagctgggaaaaccagtatcttgaaagaaattgccaatgggatcactgacaactatcct
gaggtggagttgatcgttcttttgatcgacgagcgcccagaagaagtgactgatctggaa
cgcagtgtcaaaggcgatgttgtttcttcaacctttgacctgcagcctagcaaccatacc
cgtgtttctgaattggtactagaacgggcgatgcgtttggtagaagacaagcgtgatgtc
gtgattctgatggatagtatcactcgtttggcaagagcctacaacttagtggtacctcca
agcggacgtacactaagcggcgggatcgatccagctgctttgtacaaaccaaagaaattt
tttggtgctgcccgtaatattgaagaaggcggcagtttgacgattcttgccacagcactg
gtggataccggcagccgcatggatgatgtcatctatgaagagtttaaaggaaccggcaat
atggagctgcagctttctcgcagcttagcagaacgtcggatctttccagcgatcgacatc
aagaaatctggtacccgtaaagaggaattgctgatgagcagcgagcaattggaagaaacc
tggcgcttacgcaacaacatgttgggggattccttggagttcacagaacaattcattcaa
ttcttgcgtaaaacaaagaacaatgaagagtttttagcggcttttcatgatgtccatttc
ggagacaaacggcaaaaaagaaatataaaaagataa
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